Gene Rcas_4126 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4126 
Symbol 
ID5541637 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5341313 
End bp5342113 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content63% 
IMG OID640896238 
Productphosphomethylpyrimidine kinase 
Protein accessionYP_001434176 
Protein GI156744047 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 
TIGRFAM ID[TIGR00097] phosphomethylpyrimidine kinase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000167736 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATACCAC GAGCATTGAC AATCGCCGGC TCCGACTCCG GCGGCGGAGC AGGCATTCAG 
GCAGACCTGA AAACCTTCAT GGCGCACGGC GTCTACGGCG CAAGCGCCAT CACCGCCATT
ACCGCACAAA ACACCCTGGA AGTACGCGCA GTTGTTCTGC TCGAGCCGAC CATAGTCGTT
GCGCAGATCG AAGCCGTGCT CGACGATATT GGCGCCGATG CCGTCAAAAC CGGTATGCTC
GGCAATGCCG CCATCATCGA AGCAGTCGCC GATACACTCG CGCGTTACCG CATCGAGCGC
CTGGTCATCG ACCCGGTGAT GGTTGCAAAG AGCGGCGCGC GTCTACTGGA GGAAGACGCC
ATCACAACCC TGCGTGAGCG CCTGCTGCCG CTGGCTTTAG TCATCACGCC GAACCTGCCG
GAAGCCTCGG TGCTGCTGAA CCGCCAGGTG ACCGATGAAC ACGACATGGC GGACGCCGCG
CGCGACCTGC ACGCGCTGGG TCCACGGTAC GTCCTGCTCA AGGGAGGGCA CCTGGCAGGA
GACGACGTTG TCGATCTGCT GTACGATGGT GAGCGCTTTG TCGAACTGCG CGCGCAGCGC
CTTGAGACAA ACCACACCCA TGGTACCGGC TGCACCTACG CCGCTGCCAT CGCCGCCCTG
ATCGCGCGTG GCTTGCTGGT CGAACAGGCG GTGCGTCAGG CGCACGCCTA CCTCCACGAG
GCTATCGTCC ATGCCCCGGC TATCGGCAAG GGGTACGGAC CGGTCAATCA CCTGGTGCAC
GGATTGCCGA CGGACCGGTG A
 
Protein sequence
MIPRALTIAG SDSGGGAGIQ ADLKTFMAHG VYGASAITAI TAQNTLEVRA VVLLEPTIVV 
AQIEAVLDDI GADAVKTGML GNAAIIEAVA DTLARYRIER LVIDPVMVAK SGARLLEEDA
ITTLRERLLP LALVITPNLP EASVLLNRQV TDEHDMADAA RDLHALGPRY VLLKGGHLAG
DDVVDLLYDG ERFVELRAQR LETNHTHGTG CTYAAAIAAL IARGLLVEQA VRQAHAYLHE
AIVHAPAIGK GYGPVNHLVH GLPTDR