| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4110 |
|---|
| Symbol | |
|---|
| ID | 5541621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5321999 |
|---|
| End bp | 5322661 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640896222 |
|---|
| Product | dihydroxyacetone kinase, L subunit |
|---|
| Protein accession | YP_001434160 |
|---|
| Protein GI | 156744031 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2376] Dihydroxyacetone kinase |
|---|
| TIGRFAM ID | [TIGR02365] dihydroxyacetone kinase, phosphoprotein-dependent, L subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0295747 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATCA CCGTCGACCA TGTCATCCGC TTTCTTGAGC GCGCTGCCGC GCTTATCCGC
GACCACGCGG CTGAATTGAC AGAACTTGAT ACCGTGATCG GCGATGCAGA CCACGGGACG
AATCTGAATC GCGGCTTCTC CGCAGTCGTC GTCAAACTCG ATGCGCTACA GGACGGTGAT
ATCGGCACGA TCCTGGACGT TACCGGGAAA ACGCTGCTCG CAACCGTCGG CGGTGCGGCC
GGTCCGCTCT ATGGAACGGC ATTTCGGCGC GCCGGCGCAT TGCTGGCGGG GCGCTACACG
ATTGACGGCG CCGATATTGC TGCTGCGCTC GAAGTGGCGC TCAAAGGGAT CGTCGAACGT
GGGCGCGTCC AGCGTGGCGA AAAGACCATG CTCGATGCGA TTGCGCCAGG AGTCGACACA
TTTCGCACCG CTATCGTGCA AGGCCAATCG CTCGAAGAAG CGGCACGCTG TGCGCTCGTC
GCCGTTGAGG AAGGGATGCG CGCCACGATA CCGATGCAGG CGACCAAAGG GCGCGCCGCA
TTTCTCGGAC CGCGCAGCAT CGGGCATCAG GACCCTGGCG CAACATCGGC GTACTATATT
GCCTGTGCGA TGGTTGGTCT CGATGCCGAC CCGCCATCTC ATCAGACAAC CGAGATGCAC
TGA
|
|---|
| Protein sequence | MQITVDHVIR FLERAAALIR DHAAELTELD TVIGDADHGT NLNRGFSAVV VKLDALQDGD
IGTILDVTGK TLLATVGGAA GPLYGTAFRR AGALLAGRYT IDGADIAAAL EVALKGIVER
GRVQRGEKTM LDAIAPGVDT FRTAIVQGQS LEEAARCALV AVEEGMRATI PMQATKGRAA
FLGPRSIGHQ DPGATSAYYI ACAMVGLDAD PPSHQTTEMH
|
|---|
| |