| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4096 |
|---|
| Symbol | |
|---|
| ID | 5541607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5310218 |
|---|
| End bp | 5311468 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640896208 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001434146 |
|---|
| Protein GI | 156744017 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.25734 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.218815 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCTCT GCCAGGATAC CGACAAACAT CTCATGAAAC GCAACGCGCT TGCCATTCTT
TTTCTTGCGG TCTTCGTCGA TCTGGTCGGC TACGGCATGA TCGTGCCGCT GTTGCCGTTC
TATGTGCAGC GCGTCGCTCC CGGCGCCACA CTGGTCGGCA TACTGAGCGG GTTCTATGCT
ATGGCGCAGT TTCTCGTCGG TCCAATGCTG GGGAGTCTGT CGGATCGGTT TGGTCGCCGC
CCGGTGCTGA TTGCTTGCCT GAGTGGCACG TCGCTCGCGT ACCTGCTCCT GGCGATTGCC
GACAGTCTGC CGCTGTTGGT ACTGGCGCTG TTCATCGATG GGGTCACCGG CGGCAATCTC
AGCATCGCCC AGGCGTCGAT CGCCGACAGC ACCACGCCGG ATCGCCGTGC ACGCGGTCTG
GGTCTGATCG GAGCGGCATT TGGATTGGGA CTGATGGTTG GTCCTGTGAT AGGCGGGGTG
CTGAGCCTGA CCAACCTGAG CGCCCCGGCG CTGGTCGCTT CGATGCTGGC GTTTGCGAAC
ACCCTGTTTG CGCTTGCCGC GCTCCCCGAA TCGCTACCGC CGGAACGCCG CCGATTAATC
CCTCTCGATA GCGCGAAGCC ATCGCACTGG AGCATGGTGC TGCGCGTTGC AAACCCACTG
GCGAACCTGA TTGTCCTGCT GCGAATTGTG ACGATCCGTC GCGTGTTGAT GGTCGTAGTG
TTGCTGAACC TCGCATTCTC AGGGCTGTAC AGTAACTTCC CGCTCTTTAC CGCCGCGCGC
TTTGGCTGGG GTATGTTCGA GAATGCGCTA TTCTTTGCGT TTGTGGGTAT CTGCGCAGTG
ACCACACAGG GATTGCTGCT CGGTCGCATG CAGCGCTGGC TGGGAGACGC GCGACTGGCG
CGTGTTGGAA TGATCGTGAT GGTATGCGCC CTGCTCGCAA CCGGTCTGGC GTCAGCGGCA
TGGATGCTCT ATCCATCAGT GGGATTGATC GCGTTTGGCA GCGGTCTGGC AATCCCGGCA
CTCACGAGCC TGCTCTCGCT CCAGGTATCG CCCGCCGACC AGGGGCGCCT GATGGGAGGA
ACGGCAGCAC TGCTCAACCT GACGATGATC GCCGGTCCAG TGGTGGCGGG GATCAGTTTT
GATCGGGCGG GAACGGCGGC GCCATATCTC ATCGGAGCGT TGCTGGGAAG TGCGGCGTTG
TTGATATTCG CCTCGCCAAC GATCATTCCT CGTCAGGAGG CAACGTCGTG A
|
|---|
| Protein sequence | MILCQDTDKH LMKRNALAIL FLAVFVDLVG YGMIVPLLPF YVQRVAPGAT LVGILSGFYA
MAQFLVGPML GSLSDRFGRR PVLIACLSGT SLAYLLLAIA DSLPLLVLAL FIDGVTGGNL
SIAQASIADS TTPDRRARGL GLIGAAFGLG LMVGPVIGGV LSLTNLSAPA LVASMLAFAN
TLFALAALPE SLPPERRRLI PLDSAKPSHW SMVLRVANPL ANLIVLLRIV TIRRVLMVVV
LLNLAFSGLY SNFPLFTAAR FGWGMFENAL FFAFVGICAV TTQGLLLGRM QRWLGDARLA
RVGMIVMVCA LLATGLASAA WMLYPSVGLI AFGSGLAIPA LTSLLSLQVS PADQGRLMGG
TAALLNLTMI AGPVVAGISF DRAGTAAPYL IGALLGSAAL LIFASPTIIP RQEATS
|
|---|
| |