| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4067 |
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| Symbol | |
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| ID | 5541578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5279387 |
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| End bp | 5280676 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640896179 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001434117 |
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| Protein GI | 156743988 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.220594 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCATCTA TCGAGGAACC AACCGCTGAA ATCGAACGCC TGCGCCGGCG CGTTGCCGAA
CTCGAAATGA TATTGGAGCA ACGACGGCAG GACGATGAAG CAATCGAACG CCTGCGCGCA
ATTATCGAAA ACACGCCGGA CGTTATCAGC ACTGCTGATG CAGAAGGGCG GGTTGTGTAC
ACAAATCAAG CGGGGCGGCA GTTGTTCGGT ACACCGGACG ATACGCCACG AAGCGACCAT
CGTATTCCAC AATTCCATCC CGACTGGGCT GCGGATCTGA TCCTCAACGA AGCCCTGCCC
CACGCAGCGC GCGAAGGGCG CTGGAGCGGC GAAACCGCCG TGTTCGACGC GCAAGGGCGA
GAGATTCCGG TAGCGCAGGT CATTATCGCG CACAAGAATG CATCGGGCGA GGTGACACAC
TTCTCGACTG TTCTGCGCGA CATCAGTGAA AGCAAGCGGG TCGAAGCCAC GCTGCGCGAA
AGCGAGCAGC GTTTGTTGCG CTTCCTTGAT GCGCTGCCGG TCGGCGTCTT CGTCGTCGAA
CCTGATGGAC GCCCCTTCTA TGCCAATCGC AGCGCCATTG AGTTGCTGGG CAAGGGCATC
ATGCCGGAAG CCACGACCGA TCAGCTTGCC GAAATCTACC GCGCCTTCGT CGCCGGAACC
GATCAACCCT ATCCTACCGA GCGCATGCCG CTGGTACGCG CGCTGCACGG TGAAGCATCA
TCCGTCGATG ATATGGAGAT CGAACGCCCC GATGGTCGAG TGCTCATCGA AATCCACGGC
GCGCCGATCC GTGATGTTGA GGGACGAATC GTCTATGGCA TGGTTGCATT TACCAACATC
ACGATGCGGC GGCGCGCCGA GGAAGCCATC CGCGAACGCG CTATGCAACA ACAGATCATC
GAAGCGCAAC AGGCGGCATT GCGCGAACTG AGCACGCCAC TGATGCCAAT CGCCGAGGGG
GTGGTCGTTA TGCCGATCAT CGGCTCTATC GACAGCCGAC GCGCCCAGCA GATCATGGAA
ACGCTCCTGG AAGGCATCGC CGCACACAGC GCCGATATTG CCATCCTCGA CATTACCGGC
GTTCGTGTCG TTGATACGCA GGTCGCCGGG GCGCTCGTCC GCGCGGCGCA GGCGGCGCGC
ATGCTCGGCG CGCGCGTCGT GCTCAGCGGG ATCAGCGCCG AAATCGCGCA GACGCTCGTG
CATATCGGCG CGGAAATGCA CGAGATGATT GCGCTCCACA GTTTGCAGCA GGGTATCGCT
TATGCGCTGG AACAACGTCA GGCACTCTAA
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| Protein sequence | MSSIEEPTAE IERLRRRVAE LEMILEQRRQ DDEAIERLRA IIENTPDVIS TADAEGRVVY
TNQAGRQLFG TPDDTPRSDH RIPQFHPDWA ADLILNEALP HAAREGRWSG ETAVFDAQGR
EIPVAQVIIA HKNASGEVTH FSTVLRDISE SKRVEATLRE SEQRLLRFLD ALPVGVFVVE
PDGRPFYANR SAIELLGKGI MPEATTDQLA EIYRAFVAGT DQPYPTERMP LVRALHGEAS
SVDDMEIERP DGRVLIEIHG APIRDVEGRI VYGMVAFTNI TMRRRAEEAI RERAMQQQII
EAQQAALREL STPLMPIAEG VVVMPIIGSI DSRRAQQIME TLLEGIAAHS ADIAILDITG
VRVVDTQVAG ALVRAAQAAR MLGARVVLSG ISAEIAQTLV HIGAEMHEMI ALHSLQQGIA
YALEQRQAL
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