| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_4055 |
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| Symbol | |
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| ID | 5541566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5262300 |
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| End bp | 5263751 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640896167 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001434105 |
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| Protein GI | 156743976 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0254154 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCATCC CAGATATCGT TCCATCAACC GCTGAAACGA TTGCGCCCGC CGCACCATCG
ACGGAAGCGC GTAACGAGAC TATTGATCGA CCATCGCTGC GTCGCCGGGT GATGGGTCTG
GCACTGCCGG CCATTGGTGA AAACCTCCTC CATACCGCGC TTGGCATTGC CGACACTATT
CTGGTCGCCG GGATCGGCGT TGTGGCGCTG GCAGGCGTTG GCGCGGCGCT CAATGTACTC
TTTATCGTCA TGGCGGCGCT CAGTTCGCTG TCGGTCGGCG CGTCGGTGCT GGTGGCGCAG
GCGATTGGCG CAAACAATGG CGCGCGGGCG AGTCATGTCG CCGGTCAGGC GCTGATCTGG
GGCATTGCGC TATCGCTGCC GATCACGCTT GTCGGGCTGA TCTTCGCAGA ACCGGTGGTG
GCATGGTATG GCATGGCGCC GGATGCTACA GCAGTTGCCG CCGAGTACCT GACGATCAGC
GCAGCCGGCA TTCCGGTGCT GGCGTTGATG CTGATCGGCG GGAGTGTGCT GCGCGGCGCT
GGCGACAGCC GCACGCCGAT GGTGATTACG GCGCTGGCAA ATGTGCTGAA TCTGGTCGCG
TCCTGGGTAT TGATCTACGG TCACCTGGGC ATGCCAGCGC TTGGGGTGGC GGGCAGCGCG
TGGGGCACGC TGATCGCGCG CGTTGCAGGC GCGGCGCTCT TCCTGGCGAT CTTGCTGCGG
ATCAGCCCCC GGTTGCGCGT CGGCGGAGCC GGAACCTGGC GACTGCGCTG GGGAACGGCG
CGCGAGGTGC TCTGGCTTGG CGCGCCTGCG GCGCTAGAAG AGATTATCAT CATTACCTCG
TTTGCGGCGC TGACGCCAAT TGTTGTCGGG CTTGGCACGG TAGCGCTTGC GGCTCATCGT
GTTGCGCTCA ACGTTCTCTC ACTCTCGTTC ATGCCGGGGA TCGGCTTCAG CCTGGCGACA
ACGGCGCTCG TCGGGCAGGC AGTCGGCGCC GGGCGCAGCG ATGAAGCGCG CGCTGTGACG
AATGTGGCGA TGCGCTGGGC GATCCTCTGG ATGGGCGGGT TGGGGGCGTC GTTCATCCTG
TTCGCGCCGC ACATGGTCGG CATATTCAGC AACGACCCGC AGTTGGTTGC CATTGGCGCT
GCGGCGGTGC AGGTCGTCGC GCTGGCGCAG CCGCTCTGGG CTGGCACATT TGTCATTGGC
GGCGCGCTGC GCGGCATTGG CGACACTCGC ACGCCAATGA TCATTTCCGG CGTCCTTGGA
TGGGCAGCGG TTGGCATCGC TTTCCTGCTC GTGTATGTCT GGCCTGCGCT CTGGGCGGTA
TGGCTGGCGT ACATCTTCAC CGGGCCGCCG GAGATCGGGG CGTTGTGGCG CGTATGGCGG
CGCAAGGTGC GAACGGTGGT AGTAGAGGCA GAAGGCGAGA GGCAAGAGGT GAGAGGATCG
ACAGAGGCAT GA
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| Protein sequence | MTIPDIVPST AETIAPAAPS TEARNETIDR PSLRRRVMGL ALPAIGENLL HTALGIADTI
LVAGIGVVAL AGVGAALNVL FIVMAALSSL SVGASVLVAQ AIGANNGARA SHVAGQALIW
GIALSLPITL VGLIFAEPVV AWYGMAPDAT AVAAEYLTIS AAGIPVLALM LIGGSVLRGA
GDSRTPMVIT ALANVLNLVA SWVLIYGHLG MPALGVAGSA WGTLIARVAG AALFLAILLR
ISPRLRVGGA GTWRLRWGTA REVLWLGAPA ALEEIIIITS FAALTPIVVG LGTVALAAHR
VALNVLSLSF MPGIGFSLAT TALVGQAVGA GRSDEARAVT NVAMRWAILW MGGLGASFIL
FAPHMVGIFS NDPQLVAIGA AAVQVVALAQ PLWAGTFVIG GALRGIGDTR TPMIISGVLG
WAAVGIAFLL VYVWPALWAV WLAYIFTGPP EIGALWRVWR RKVRTVVVEA EGERQEVRGS
TEA
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