Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3988 |
Symbol | |
ID | 5541498 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5202317 |
End bp | 5203108 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640896100 |
Product | IstB ATP binding domain-containing protein |
Protein accession | YP_001434039 |
Protein GI | 156743910 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1484] DNA replication protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00332304 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCGAGAA ATACGTCGGT GGCGCCTACG GCGACCTCTT CCGCCGTGGC AGCGATGTCT CCGACCTCCA GTAGCGCGGT CTGCCCTCAC TGCGGCGGTT CAGGGTTTTA CAAAAAAGCG GTGCCCTTTG GGCATCCCGA CTTCGCCAGA CTCTTCCCGT GCGTGTGTAA AATGGCGGAA CAGGAACAGC GCGAAGCGGC GCGCTTGCTG GAAATCAGCA ATCTGGCGGC ATTTCTCGAC AAGACCTTCG AGACCTTCAA CCCAAACGTC CCCGGCGTTC GTCGCGCTTA TTTGCGTGCG CTCGAATATG CGCGCCAACC ACGCGGCTGG CTCATTTTGT TTGGCAACTA TGGGTGTGGC AAAACCCACC TGGCGGCTGC CATCGCCAAT CAGTTGATCC AGAACCACTA TCGTGTGCTC TTTGCCGTCG TTCCTGATCT CCTCGACCAT CTGCGCTCGA CGTTTGGACC ATCGAGCGAG ATCGAGTACG ATCAGCGTTT CGAGGATATT CGTGAGGCGG ATGTCCTCAT CCTCGACGAT CTCGGCACCG AAAACACGAC CAGTTGGGCG CGCGAAAAAC TGTTTCAGAT TATTAATCAT CGGTACAATT TTGCATTACC GACGGTCATT ACCAGCAATC GCAAACCCGA GGAGATCGAC CCGCGTATCT TTTCACGCAT GTCCGACCGC GCACTCTGCG AAGAACATAT CATTATCGAC GCTGCCGACT ATCGCAGGCT GCCACTGGCG CAACGCTACC CGATCAATAA TGCGCAACGC CGCCTGAAAT AG
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Protein sequence | MSRNTSVAPT ATSSAVAAMS PTSSSAVCPH CGGSGFYKKA VPFGHPDFAR LFPCVCKMAE QEQREAARLL EISNLAAFLD KTFETFNPNV PGVRRAYLRA LEYARQPRGW LILFGNYGCG KTHLAAAIAN QLIQNHYRVL FAVVPDLLDH LRSTFGPSSE IEYDQRFEDI READVLILDD LGTENTTSWA REKLFQIINH RYNFALPTVI TSNRKPEEID PRIFSRMSDR ALCEEHIIID AADYRRLPLA QRYPINNAQR RLK
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