| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3987 |
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| Symbol | |
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| ID | 5541497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5198892 |
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| End bp | 5202170 |
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| Gene Length | 3279 bp |
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| Protein Length | 1092 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640896099 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001434038 |
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| Protein GI | 156743909 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.017736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGGCA ACCGTGCATT GTTCGACCGC GCGATGGAGC AAAGCCGCGA AGCAGCGCGG
CTTATGAACT GGGACGAGGC GCTGAAACAG GCAGCCCGCG CCTTGCAAGA ATTCCCTCAG
GACCTGGATG CGCGCTTGGC TGTCGCTGTT GCGTTCTTCA ACACCGCAAA GTATGCGCAG
GCGCTTCAGA TTTTCGATGA ATTGCGTCGC ATCGATGCCG GCAATCCATT CTATCTGGAA
TATCTGGCGC GTACCCACGA GCGTCTCGGC GACGTGCAGG CGGCAACCAA CGCCTATGTG
CAACTTGCCG ATCTTCAGAT GAACCGCAAA CTGGCTGCAC GCGCCATCGA TGCCTTACGC
GAGGCGCTAC GCCTGCAATC CGACGCCGAC GATCAGCGGC TGCGTCTGGC GCAGTTGCTC
GCCGATCAGG GCGCGAGTGC AGAGGCGGCA ACGCACTATC TCGAACTGGC ACGGCGCGCT
CAAGCGCGTG GGAGCCTCGA ACAGGCGGCG GAACTGGCGG AAATGGCGTT GCGCTGCGTA
CCCGACAATC GTGAAGCCAA AGAGTTAATC GCGGCGCTCC ACGATGCCCT GGCACAGACG
GTCCAATCAG CAATCGAAGC GACCGCAACC GCCGCCGATG CAACCGTATT GCCCATTATC
GGCACCGGCG GTTTGCGCGG TGCGCACCTC GCCATCGAAC GAATCATCGC GCTGGCGCAC
GAACGTCAGG AGGCCGGCGA TATTGATGGC GCCATCGAGC AGTATGAACG CGCGCTCAAA
CTTGGAACCG ACCGCAGCGA TGTGTTTTAT AGCCTGGGCT TGCTGTATCA GGAACGCGGC
GACTATCAAC GCGCGGTGGA ACTGTTGCAG GGCGCCGCTG GCGACCCGGA ATACGCCCTT
TCAGCGCATT ATATGCTTGG TCAGGCGTAT CAGGCGCTGG GCCAACTGCC CGAAGCAGCG
CACGAATACG AACAAACTAT TCGTCTGTTG CCGCTGGAAT CGATTGGACG CGCCGAAGCC
GACGATATGA TCCAGATGTA CGAGAGCGCC GCGCAGATCT ATATTCAACT CAACGACATT
GCGCGCGCTG CAACGCTCTA TTCGACGCTG GCAAACTTTC TTCAGGGCAA ACGCTGGGGA
CGCGAGCGCG CCGATGAGTT CCGCCAGAAA GCCAAAGACC TGACCGAGCG CAATATGTTT
GCCAAACTCC GCACGCTCGG CACGGGCGCA CTGACATCAC CGCCATCCGC CCCTGAACCC
GAAACGCCTC CCGAAAGTCC GATGCCCGAA ACCTGGGGGA AAATTCGCCC TATTACCGAT
TTTCTGCGAG CGCCTGAGCC ACAGACCCCC GACCATCATC GCTTTGAACC ATCCCCATCA
GTCGCCGCCG AACCGGTCGA CCCGCTGGCA ATCCTCGAAA CGCTGCCGCA TCCCGAACAC
GTTCCCGTTG CACCGGTAAC ACCGCTCGAC ACGACCGGAC TGGATGAAAT CGGTGAACGG
TATGTGCTGG CGAGCGAAAA GTATGTCGAA CAGGGATTGA TGCTGGCAGC CAACGACGCA
TGTATGGAGG TTATCAGGCT GAACCCGGAG TATCTGCCGA TTCACCTGCG ATTGGGAGAG
ATTTACGAGC GCGATGGACG CAAAGACGAA GCATTAATCA AGTATCAACT GTTGATCGAC
ACGTATGTGG CGCGGGGAGA ACCCCGGCGC GCCATCGACG TTTACTACCG GCTGATCGAA
CTGTCGCCCG ATACAATTAT GCCGCGTTCG CGGCTGGCTG AGTTGCTGCG CGCTGACGGA
CGAAACGAAG AGGCAGCGCA GCAACTTGCC ATTGTTGCCG GCGCCTATTT TCGGATGGGA
CAAACGACCA AAGCGCTCGA GGAGTACCGA CGCGCCCTGC AATGGTCGCC GTCCAATGCA
GAACTCCACG CACAGTATGG GCAGGCGCTG CTGAAACTCG ACCGCGCCGA GGCAGCGCTG
GTCGCTTTCC GGCGCGCTCT CGAACTCGAT CAGCAGAATC CGGTTCATAT TGCACGCATC
AACATGGCGC TGGCCATTAT GGGTGAGCAA CCCGTCGCCG TCTGGCAATC GCTGGCGACG
CTGCTCGACC AGCTCAAACA GCATCCCCAA CGCCTGAATG AAGTACAATC CGAGTACCGC
GCCACGTTAC TGGTTGCCGA TCTTCCCATA TTGCACTACA TTCTGGGCAT TGTTCAGCAG
CACGCCGGGC AACATCCATC GGCGCTGCTG GAGTTCGAGC AGGCCATCGA ACTGCTGAAC
GCCGAGAACG ATCCGACTCT GACGCCACAC CTGGTTTATC AGGCAATGGC GGATAGTCAC
ATTGCACTGG GTCAGGCGAG TGAGGCGTTG CGCCAGCTTC AGCATGCCCT GGATCTTGCT
CCTGCGCCGC CGCCGCCGGA AAACGCCCGT TATCCGTTTT CGCTCCCCCT TTCTCAGGGC
GAAATCGTGC GCCGTATGGC GGAAGCATAT GCCGCTGTCG GCGATCTCGC CAGCGCCGAA
CGCGCGCTTC AGGAAGCCAA ACAGTTTCTG CCCTACGACC GCGCGATCTA CACCAAACTG
TCCGATATCT ATTTTCGGCA GGGTCGCCTG AATGAAGCGC TGACGCAACT CGACGAACTG
GCGACCCACT ATGAGCAGCG CCAGATGCTG GATCGCGCGA TCGAGGCACT CGAAAATGCG
CTGCGCCTGG CGCCCAACAA TATTCCGATC AGCCATCGCC TGGCGAAAAT GTATATCCGG
CGCGGCTACC TGGATAAAGG CGTCGAAGCG CTGACGCGTG TCGCAGAACT TCAACGGAAG
GAAGGGCAGA TCAAAGACGC CATTGCCAAC CTTCAGCAGG CGGCCGAGGT GCATTGGACG
CTTGGCAGGC AGGAGGAGGC GCGCGCACTC TATGACAAAA TCGTGCATAT CGCACCCAAT
GATATTGAAG CACGCCAGTG GCTGTCGTTT ATGTACACCC TGGCCGGCAT GACGCGTGAA
GCCGTTGCGC AAAAGAAACA GATTATTCGC ATCCTGCTCC AGCGGCGCGA TCTGGATAAC
GCTATTGCGG AGATGCATCA AATCTACGGA CTCGACCAGA ACGATACCGA TAATCTGTTT
CAACTCGGTG ATGCGCTTAT GCGGCGGCAG GAATATGAAC AGGCAATCCG CATCTATACC
AGGCTGGCAA AAGTGCCAGG CGTCGAAATT GAACGCGTCG AAGCGTTACA GGCAGCAGCC
AGACGGATGC TCGAACAACA ACAGGCAGGA AACCGGTGA
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| Protein sequence | MPGNRALFDR AMEQSREAAR LMNWDEALKQ AARALQEFPQ DLDARLAVAV AFFNTAKYAQ
ALQIFDELRR IDAGNPFYLE YLARTHERLG DVQAATNAYV QLADLQMNRK LAARAIDALR
EALRLQSDAD DQRLRLAQLL ADQGASAEAA THYLELARRA QARGSLEQAA ELAEMALRCV
PDNREAKELI AALHDALAQT VQSAIEATAT AADATVLPII GTGGLRGAHL AIERIIALAH
ERQEAGDIDG AIEQYERALK LGTDRSDVFY SLGLLYQERG DYQRAVELLQ GAAGDPEYAL
SAHYMLGQAY QALGQLPEAA HEYEQTIRLL PLESIGRAEA DDMIQMYESA AQIYIQLNDI
ARAATLYSTL ANFLQGKRWG RERADEFRQK AKDLTERNMF AKLRTLGTGA LTSPPSAPEP
ETPPESPMPE TWGKIRPITD FLRAPEPQTP DHHRFEPSPS VAAEPVDPLA ILETLPHPEH
VPVAPVTPLD TTGLDEIGER YVLASEKYVE QGLMLAANDA CMEVIRLNPE YLPIHLRLGE
IYERDGRKDE ALIKYQLLID TYVARGEPRR AIDVYYRLIE LSPDTIMPRS RLAELLRADG
RNEEAAQQLA IVAGAYFRMG QTTKALEEYR RALQWSPSNA ELHAQYGQAL LKLDRAEAAL
VAFRRALELD QQNPVHIARI NMALAIMGEQ PVAVWQSLAT LLDQLKQHPQ RLNEVQSEYR
ATLLVADLPI LHYILGIVQQ HAGQHPSALL EFEQAIELLN AENDPTLTPH LVYQAMADSH
IALGQASEAL RQLQHALDLA PAPPPPENAR YPFSLPLSQG EIVRRMAEAY AAVGDLASAE
RALQEAKQFL PYDRAIYTKL SDIYFRQGRL NEALTQLDEL ATHYEQRQML DRAIEALENA
LRLAPNNIPI SHRLAKMYIR RGYLDKGVEA LTRVAELQRK EGQIKDAIAN LQQAAEVHWT
LGRQEEARAL YDKIVHIAPN DIEARQWLSF MYTLAGMTRE AVAQKKQIIR ILLQRRDLDN
AIAEMHQIYG LDQNDTDNLF QLGDALMRRQ EYEQAIRIYT RLAKVPGVEI ERVEALQAAA
RRMLEQQQAG NR
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