Gene Rcas_3895 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3895 
Symbol 
ID5541401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5099258 
End bp5099734 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content61% 
IMG OID640896006 
Productferric uptake regulator family protein 
Protein accessionYP_001433949 
Protein GI156743820 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0735] Fe2+/Zn2+ uptake regulation proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.845515 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCGTT TTCTCGATGA GCGAAGGCAT ATGCTACCGC CGGCAGTGAC GTCCCTCGCC 
GAGCAACTGG CGGCCGCAGG ATACAAAGTG ACCCAGCCGC GCCTGGCGGT GCTCAAGGCG
ATCACGGCGC AGCCAGGCGC ATTCAGCGTG CAGGAAGTCG AGCAGTGGCT CCTTGAGCGC
AATGAGTCGC CGGGGATCGC CAGCATTTTC CGCACCGTCC GTCTCTTGTG CGACCTGGGC
ATGCTTCAGC GCCTCCACGG GCTTGACGAT TGCCATCGCT ACTGTCTGGG GAGCGGGCAC
ACCCATCATC TGGTGTGCAC CTTGTGTGGC GTGATCGAGC AGTTCGACAA CTGTGGCATT
CAGGGAGTCA TTGCTGCGCT TGAACAATCG ACCGGCTATC GCATCACCAA CCATGTGGTG
GAGTTGTTCG GCGTGTGTCC GCAATGCCTG GCGCCCTCAG CATCGTCGGC GACGTAA
 
Protein sequence
MSRFLDERRH MLPPAVTSLA EQLAAAGYKV TQPRLAVLKA ITAQPGAFSV QEVEQWLLER 
NESPGIASIF RTVRLLCDLG MLQRLHGLDD CHRYCLGSGH THHLVCTLCG VIEQFDNCGI
QGVIAALEQS TGYRITNHVV ELFGVCPQCL APSASSAT