Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3882 |
Symbol | |
ID | 5541388 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 5077209 |
End bp | 5078519 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640895993 |
Product | hypothetical protein |
Protein accession | YP_001433936 |
Protein GI | 156743807 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3693] Beta-1,4-xylanase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0281101 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGGAAAG CGTCATCGGC TATGCATCGT TCCAATATGT GCGTGTTGTC CTGGATTGCG CGATATGGCT TTATCATCGC ACTCCTCGCC GCCTGTGGAT CGGCGACGAC CAACCCGCTT ACCCGCCCTG ATATTGATGA AGTGCGCCCC ACCACCGCAG CGCAGCCGAC GTTGACCACA GCGCCGACAC CGACGAGAGC GCCGGTCTCT GGAACGCCGC AACCGCGCTT TCTGCGCACA TCTGCGCTGC AATTCGGCGT AGTGGCGCAT CTGTACTATA CCGACCGCAG CCGGGTGCTG ATGCTGACGA AGATCGCTGG CTTCGACTGG GTGCGACAAC AGGTACACTG GAAAGATATC GAAGCGGCGC CGGGCGTCTA TTACTGGGAT GAACTGGACC ACATCGTCGC CGATGTGTCT GCCAGCAACC TGAAATTGCT GGTGAACATC GTGCAATCGC CGCCATTCTA CCCTCCCGGC AATGGCGGCA AGCCGCGCGA CCCGAAGGTT ATGGGCAATT TTGTGGCAGC AATGGTGGAA CGATATGGAG ATCGCATTGC GGCTATCGAG ATCTGGAACG AGCCAAACCT GGCGGTCGAG AATGGCGGGC GCGTTACGCC TGAGGATCCG GGACGGTACG TTGAGATTCT GGCAGAGTGC TATCGCCGCA TCAAGGCGAT CAACCCCAAT ATCTACGTGC TGGCGGCAGC GCCGGCATCG ACCGGCGTGT TCGACCCGGA GCGCGCCATT CCCGATATTG AGTACCTGCG CGCCATGTAC ACCTACAAGA ACGGCATGAT CCGTGACTAT TTCGATGCGC AGGCAGCGCA CCCCGGCGGC GCAGCGAACT CCCCCGACTG GCTCTATCCC GAATCTCCCG GCAATCGTCC GGCGTGGAAC GACCATCCGA CCCATTACTT CCGCCACGTC GAAAATGTGC GCGCGTTGAT GATCGAACAC GGTCTCGGCG ACCGGCAGAT CTGGATTACC GAATACGGAT GGGCGACGCC AAATACGACA CCGGGATTCG AGTTTGGCAA CTTGATGACG TTCGACGATC AGGCAGACTA TATCGTTCGG GCGATCACGC GAGTCTATGA GCAGTATCGT GACGAAGAGG GGCGTCCGTG GGTCGGGGCG ATGTTTTTAT GGAATATGAA CTTTGCCGTC CTGTGGGGTG CACAGGGCAA CCCGAACCAC GAGCAGGCAT CGTTTAGTCT GCTGAATCCC GACTGGAGTC CTCGTCCGGC ATTTATTGCA CTTCAGGGGT TGCATCAGCG TCTGAAAGTA TCTCAGGGGC GGTCGCCATA A
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Protein sequence | MRKASSAMHR SNMCVLSWIA RYGFIIALLA ACGSATTNPL TRPDIDEVRP TTAAQPTLTT APTPTRAPVS GTPQPRFLRT SALQFGVVAH LYYTDRSRVL MLTKIAGFDW VRQQVHWKDI EAAPGVYYWD ELDHIVADVS ASNLKLLVNI VQSPPFYPPG NGGKPRDPKV MGNFVAAMVE RYGDRIAAIE IWNEPNLAVE NGGRVTPEDP GRYVEILAEC YRRIKAINPN IYVLAAAPAS TGVFDPERAI PDIEYLRAMY TYKNGMIRDY FDAQAAHPGG AANSPDWLYP ESPGNRPAWN DHPTHYFRHV ENVRALMIEH GLGDRQIWIT EYGWATPNTT PGFEFGNLMT FDDQADYIVR AITRVYEQYR DEEGRPWVGA MFLWNMNFAV LWGAQGNPNH EQASFSLLNP DWSPRPAFIA LQGLHQRLKV SQGRSP
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