| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3880 |
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| Symbol | |
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| ID | 5541386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5075134 |
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| End bp | 5075844 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895991 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001433934 |
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| Protein GI | 156743805 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0110746 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGCAG GGAAGATTGC CATTGTCACC GGCGGTACAG GAGCGCTCGG TGGCGCTGTG
GTTCAGGCGC TACTCAACGC CGGCGCGACA GTGTGGGTAC CATATGTTGG CACAGACGAC
CTCGACCGCC TGCGGAAGCG GATCACGCTG CCCACCGACG CCATATTGGA CGGCGCGCCG
CTCGATCTGA CCGACGAAGC GGCAGTGTAC CAGGCATATG GTCAGGTTGC AGGCACATAT
GGCGGCATCG ACATTCTGGT GAATATTGCC GGCGGATTCG CTGGCGGCGA ACCGGTGCAT
CGCACTCCCT GGTCGCTCTG GCAGCAGCAA CTGGATATCA ATCTTAAGAC TGCGGTCATT
TCCTGTGCGG CAGCCGTGCC ACACATGCTG ACGCGCGGCG GCGCAATCGT CAATGTCAGC
AGCCGCACTG CAACGCAAAA CGCCAGAAAT GTGGCAGCAT ACGGCGCCGC CAAACGCGCG
GTGCTGCAAC TGACCGAGGC GCTTGCCGCC GAGCTGCGCG ACTCCAACAT TACCGCTAAT
GCTATTCTGC CTAGCGTGAT CGATACGCCC GCCAATCGCG CCGCCGATCC GAACGCCGAT
CACAGTCGCT GGGTCGCGCC GGAGGCGATT GCGCGCGTTA TCCTGTTCCT CGTCGGTCCC
GACGCGCGCA TCATTAGCGG CGCGGCAATC CCGGTGTATG GCAGGGCATG A
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| Protein sequence | MLAGKIAIVT GGTGALGGAV VQALLNAGAT VWVPYVGTDD LDRLRKRITL PTDAILDGAP
LDLTDEAAVY QAYGQVAGTY GGIDILVNIA GGFAGGEPVH RTPWSLWQQQ LDINLKTAVI
SCAAAVPHML TRGGAIVNVS SRTATQNARN VAAYGAAKRA VLQLTEALAA ELRDSNITAN
AILPSVIDTP ANRAADPNAD HSRWVAPEAI ARVILFLVGP DARIISGAAI PVYGRA
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