| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3878 |
|---|
| Symbol | |
|---|
| ID | 5541384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 5070127 |
|---|
| End bp | 5073753 |
|---|
| Gene Length | 3627 bp |
|---|
| Protein Length | 1208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895989 |
|---|
| Product | methionine synthase |
|---|
| Protein accession | YP_001433932 |
|---|
| Protein GI | 156743803 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00387489 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.106452 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGAAGC CAACGTACCT CGAAGCCCTG TGCGAGCGCG TTCTGATCTA CGACGGCGCT
ATGGGCACCA GCATCGACAC ATTCCACCTG ACAGCCGCAG ACTACGGCGG CGAACAGACA
TTTGGCGCGC GCGATTATCT GGTCATTACA CGCCCCGACG TGATCGAACA GATCCATGCG
TCGTTCCTGG AAGCAGGTGC AGATGTGCTC GAAACCTGCA CCTTCCAGTC AACCCGCCCG
CGCCTTGAGG AATGGGGACT GGCCGATCAG ACGCACGCCA TCAATGTCGC GGCTGCGCGC
CTGGCGCGGC GCGTCGCCGA TGCGTTCGAG GCGCGCGATG GACGGCCGCG CTACGTGGCA
GGTTCGATGG GTCCCACCGG GAAACTGCCG TCATCCGATG ATCCGGCGCT CTCCGATGTA
ACATTCGATC AGTTGTCCGA CATCTTCTAC GAGCAGGCGA CCGCGCTGAT CGAAGGCGGC
GTCGATGTGT TGCTGGTCGA GACGAGTGTC GATATTCTCG AGGTGAAGGC GGCGCTCGAC
GGCATTCGCC GCGCAAAGGC GGACCTCAAC CGTCCTGATG TCGCCGTGCA GGCGCAGGTG
TTCCTTGATC TCTCCGGCAA GATGCTCCTT GGCACCGAAG TGCCCGCGAT CATCGCCACC
CTCGAAGCGA TGCCGGTCGA TGTGATCGGG CTGAACTGTT CGACCGGTCC TGAGCATATG
CGTGAGGCGA TCCGGTACAT GACCCGCCAC TCGCGCAAGC CAATCTCCTG CATTCCCAAC
GCCGGTCTGC CGATCGAGGT CAACGGTGAA ACGGTCTATC CAATGGAACC AGAACCGTTT
GCGCGCATTT TGGGTGAGTA TGTCCACGAG TATGGCGTGG CAGTCGTTGG CGGGTGCTGC
GGCACGCGAC CGGCGCACAT TCGCCGCCTG CGTGAAGTGG TTGGCTTCGT GCCGCCGAAA
GTCCGTGATA TTGAATACAT TCCGAGCGTC TCATCAGGGG TGCGCGCAGC GGCGCTGCGG
CAGGAAGGCA CGCTGACGAT CATCGGTGAA CGAGTCAATA CCCTCGGTTC GCGCAAGGTC
AAACGCCTGC TGTTGAACGA GGACTACGAC GGCGTGCTCG AAGTGGCGCG CGAACAGGTC
GATTCGGGCG CGCACCTGCT CGATGTATGC GTGGCAATGA CCGAGCGTTC TGATGAGCGC
GAGATGATGG TCAAACTGGT TAAAAAACTG ACCATGAACG TCGAGTTGCC GCTGGTGATC
GATACCACCG AAGCCGATGT GCTCGAAGCG GCGCTGGCGA TCTATCCCGG TCGCGCGGTG
GTCAATTCGG TGTCGCTCGA AGGGGGGCGC GGCGATAAGA TCGACCGCAC GATGCCGTTG
GTGGCGCGCT ATGGCGCGGC AACCATCGCC ATGACAATCG ATGAAGAGGG CATGGCGCAT
ACCGCCGAAC GCAAACTGGC GATTGCACAG CGCATCGCGC AGATCGCGCA GGACGAGTAT
GGCGTGCCAA ACGAAGCGCT GATCTTCGAT GTGCTGACGT TCCCGATCAC CACCGGTCAA
GCGGAACTGC GCCGCGCTGC CATCGAAACA ATCGAGGGCA TTCGCCTGGT GAAACAGCAC
ATTCCCGGAT GTTTCACAAC CCTCGGCGTC AGCAATCTGA GTTTTGGCGT TGCACCGCAC
GCGCGCGCAA CGCTCAACTC GGTGTTCCTC AAGCACGCTG TCGATGCCGG TCTCGATACC
GCGATCATCA ACCCGGCGCA TGTGACGCCA TACGCCGAGA TCCCGCCGGA ACACATCAAA
GTCTGTGAGG ACTTGATCTT CGACCGCGAC GATCAGGCGC TGGCGCGCTT CATTCAGTTC
TTCGAGGAGC ACGCGGCAGA CGCAAAAACC GAACGCGCCG ATCCAACCGA GGGCATGACA
GCGGCGCAGC GTATCCACTG GAAGATCGTC CATCGGAAGA AGGAAGGCAT CGAAGCGGAT
ATCGATCAGG TGATCGCTGA GCGAATCGGT GACATGGAGG CGCGTGCAGG CAATGGAGTG
AGCAATCCCG ATCGACGCTC GCACGAGTCG CTCGTTGCGT CACCTTTCCG CAACGCTGCT
GCCGTTGATG TGTTGAACAC CGTCCTGCTG CCGGCGATGA AGGAAGTCGG CGATCTGTTC
GGCGCCGGGC AACTGATCCT GCCTTTCGTG TTGCAGAGCG CCGAGGTGAT GAAACGCGCC
GTCGCGCACC TGGAACAGTA CCTGGAAAAA CTTGAAGGTG TCACCAAGGG CAAAATTGTG
CTGGCGACGG TCTATGGCGA TGTCCACGAC ATTGGCAAAA ACCTGGTGCA TACCATTCTT
GCCAACAACG GGTATACCGT CTACGACCTC GGCAAGCAGG TGCCGATCAA TACCATCATC
GAGAAGGCCG TCGAGGTCAA TGCCGATGCC ATCGGGTTGT CGGCGCTGCT GGTGAGCACC
TCAAAGCAGA TGCCCCTCTG CGTTCAGGAA CTCTACCGAC GCGGGCTGAA GTTCCCGGTG
CTGGTGGGCG GTGCGGCGAT CAACAAACAG TACGGGCAGC GCATTTTGTT CGTCGATGAT
AACACCCCCT ACGAACCAGG CGTCTTCTAC TGCAAGGACG CATTTGAGGG ATTGGAGACG
GTCGATGCGC TGGCAGACCC GACAACCCGT GCGGCATTTG TCGAGCGCAC AAAGGCGGAG
GCAGCCGAGG CGCTCGGCAA GAAGCAGCGT GGCCGCGTCG CGCTGGCGGA ACTCGGTCGT
GCAACGCTAA GCGACGCTGC AAAGGTTCGC TCGGCGGTGC GCACCGATGT GCCTGTTCCC
ACGCCGCCGT TCTGGGGTGC AAAGGTCGTG CGGCGCATCA AACTGGCGGA TGTGGTCGAG
TGCCTCGACC GCAATGCACT CTATCGCCTG CAATGGGGCG CAAAGAATGC CAAAGGCGAG
GAGTGGGAGC GCCTGAAGGC GGAGTTCGAC GCAAAAGTGC GCGATCTGGT GCGCGAGGCG
GAACGCGATG GCTGGCTCGA GCCGCAGGTA GTGTACGGCT ACTACCCATG CCAGAGCGAC
GGGCATGAGG TGATCGTGTA CGACCCGCCT TCAACCCTGA ACGGCGCGCA GCCGCGCGAA
TTGACGCGCT TTGTCTTTCC ACGCCAGCCA GAGCGCGAAC GTCTCTGTCT TGCCGACTAC
TTCCGCTCGC GTGAAAGTGG CGAGTATGAT GTCGTGGCGC TACAGATCGT CACGATGGGG
CGCAAAGTCG ATGATCTGAC CGAGACGCTG CAACATGCCG GCGACTACGC GCGCGCTTAT
TTCATCCACG GTTTGGGCGT GTCGCTGGCA GAGGCGCTTG CTGAGTATAC GAACCGTCTC
ATCCGCCAGC AGTTAGGGCT GAAAGGAACA CAGGGCAAAC GTTACTCATG GGGCTACCCC
GCCTGCCCGG ACCTCGAAGA GCACGAGAAA CTCTTCCGCG TACTGCCAGC CGATCAGATC
GGCGTCTCAC TGACCGAAGC CTGGCAACTG GTGCCGGAGC AGAGCACGGC AGCCATTGTC
ATTCATCACC CGGAAGCGAA ATACTTTTCG ATCGGATCCG CGCGCGAACG CGCCGAGGAG
GATGTTGCCG AGACCTTATC AATTTGA
|
|---|
| Protein sequence | MKKPTYLEAL CERVLIYDGA MGTSIDTFHL TAADYGGEQT FGARDYLVIT RPDVIEQIHA
SFLEAGADVL ETCTFQSTRP RLEEWGLADQ THAINVAAAR LARRVADAFE ARDGRPRYVA
GSMGPTGKLP SSDDPALSDV TFDQLSDIFY EQATALIEGG VDVLLVETSV DILEVKAALD
GIRRAKADLN RPDVAVQAQV FLDLSGKMLL GTEVPAIIAT LEAMPVDVIG LNCSTGPEHM
REAIRYMTRH SRKPISCIPN AGLPIEVNGE TVYPMEPEPF ARILGEYVHE YGVAVVGGCC
GTRPAHIRRL REVVGFVPPK VRDIEYIPSV SSGVRAAALR QEGTLTIIGE RVNTLGSRKV
KRLLLNEDYD GVLEVAREQV DSGAHLLDVC VAMTERSDER EMMVKLVKKL TMNVELPLVI
DTTEADVLEA ALAIYPGRAV VNSVSLEGGR GDKIDRTMPL VARYGAATIA MTIDEEGMAH
TAERKLAIAQ RIAQIAQDEY GVPNEALIFD VLTFPITTGQ AELRRAAIET IEGIRLVKQH
IPGCFTTLGV SNLSFGVAPH ARATLNSVFL KHAVDAGLDT AIINPAHVTP YAEIPPEHIK
VCEDLIFDRD DQALARFIQF FEEHAADAKT ERADPTEGMT AAQRIHWKIV HRKKEGIEAD
IDQVIAERIG DMEARAGNGV SNPDRRSHES LVASPFRNAA AVDVLNTVLL PAMKEVGDLF
GAGQLILPFV LQSAEVMKRA VAHLEQYLEK LEGVTKGKIV LATVYGDVHD IGKNLVHTIL
ANNGYTVYDL GKQVPINTII EKAVEVNADA IGLSALLVST SKQMPLCVQE LYRRGLKFPV
LVGGAAINKQ YGQRILFVDD NTPYEPGVFY CKDAFEGLET VDALADPTTR AAFVERTKAE
AAEALGKKQR GRVALAELGR ATLSDAAKVR SAVRTDVPVP TPPFWGAKVV RRIKLADVVE
CLDRNALYRL QWGAKNAKGE EWERLKAEFD AKVRDLVREA ERDGWLEPQV VYGYYPCQSD
GHEVIVYDPP STLNGAQPRE LTRFVFPRQP ERERLCLADY FRSRESGEYD VVALQIVTMG
RKVDDLTETL QHAGDYARAY FIHGLGVSLA EALAEYTNRL IRQQLGLKGT QGKRYSWGYP
ACPDLEEHEK LFRVLPADQI GVSLTEAWQL VPEQSTAAIV IHHPEAKYFS IGSARERAEE
DVAETLSI
|
|---|
| |