Gene Rcas_3874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3874 
Symbol 
ID5541379 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5066293 
End bp5067045 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content63% 
IMG OID640895984 
ProductDtxR family iron dependent repressor 
Protein accessionYP_001433928 
Protein GI156743799 
COG category[K] Transcription 
COG ID[COG1321] Mn-dependent transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000018192 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.124247 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTGAAA GCGTCGAAAT GTACCTGGTG ATGACCGCGC TCCTGCGCAG TGCGCCAGAT 
CAACCGGTTC CGCTGTCGTT GCTGGCGAGC AAACTCGGCG TATCACAGGT TTCCGCCAAC
GAAATGTGCC ATCGTTTGGA GGAGCGCGGA TTGCTCTCGT ACCAACCGTA CAAGGGCGTT
ACCCTCACGC CGGACGGCGA GGAGTGGGCA CAGCGCATTC TCTCGCGCCG TCGTCTCTGG
GTCATCTTCC TTGTCGAAAA TCTGGGCATC GATCCAGAGG AAGCCGATAC ACTGGCGTGC
CAGCTCGAAC ACATCACCTC GGAGCGACTG GTTGCGGCGC TCAAAGCCTT CCTGGAACGC
GATCCTGAAG CACGTTCATC CATCAACCGC ACCCCTCAAC CACTCACCGC CTGCACCGCC
GGAATGCGCG GCGTGGTGGC CACCATCGAC GTTGAGCCGG CAGCGGCAGC GTTTCTGGCG
CAGCAGGGAG TTGTGCCCGG CGCCGACGTC GGAGTGCTGG CGGTCGGCAT CGATGGCGCT
GTGCTGCTTC AGGTGGACGA CTACCAGGTG GCGCTGGCGT CTGCGCTTGC CGGTCGCATC
ACGCTCGCTG CTGGATCGGC GGCGCACACG GCACGGCAGG CTGCATGGCG GCGGTGCAGC
GCTTTCTGGT CGTGTGTGCG TGGTGAAGCG CCTCCGTGCC CAATCGAGAG CGTCGCCGAT
GAGTCGGAAG TTGCAGCCCT TGCCAGGAGA TAA
 
Protein sequence
MSESVEMYLV MTALLRSAPD QPVPLSLLAS KLGVSQVSAN EMCHRLEERG LLSYQPYKGV 
TLTPDGEEWA QRILSRRRLW VIFLVENLGI DPEEADTLAC QLEHITSERL VAALKAFLER
DPEARSSINR TPQPLTACTA GMRGVVATID VEPAAAAFLA QQGVVPGADV GVLAVGIDGA
VLLQVDDYQV ALASALAGRI TLAAGSAAHT ARQAAWRRCS AFWSCVRGEA PPCPIESVAD
ESEVAALARR