| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3846 |
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| Symbol | |
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| ID | 5541350 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5027899 |
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| End bp | 5028822 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640895956 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001433901 |
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| Protein GI | 156743772 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.089816 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCT ATCTGATCCA GCGAGTCCTG CTGACGATCC CGATCCTTCT GGGAATTGTC
ATCCTGACCT TTTTCCTGGT ACACCTGATA CCCGGAGATG CCGTTTCGGC GATGCAGGGG
CAGTTGAAGA TGAGTGCGCA ACAGATGGAG CAAATGCGGG AGGCGCTTGG ATTGAACGAT
CCGCTCCATG TTCAGTTGGG ACGGTATCTG ATGAGACTGG CGCAGGGTGA TCTGGGGCGA
TCGCTCTTTG GCAATCAACC GGTCGCGCTG TTAATTGCCT CCAATATTGG CGCAACGATT
CAGTTGACGG TCGCAGCAAT GGCGATAGCG ATCGCCCTTG GGGCGCCGCT TGGCATTCTG
GCAGCGGTCA AACGCGGCAC CCTCTGGGAT GTGGCAGCGG TGGTTCTGGC GATGATCGGC
GTTTCAATCC CTTCATTCTG GCTTGGTTTG ATGATGATCC AGTTGTTCGC CGTCACGCTG
GGATGGTTGC CTATTATCGA AGAACGCAGT GCACGCGGAC TGATCATGCC AGCGGCAGCG
CTGGGTCTGG CAGAAGCGGC AATTATCGTG CGTCTGACCC GCGCCACGAT GGTCGAGATT
CTGAATGCGG ACTATGTGCG TACAGCACGA GCGAAAGGGT TGTTCGATTC TGTCGTCCTC
TGGCGCCACG CACTGCGCAA TGGTCTTCTT CCGCTCATAA CCATGATTGG CATGCAGTTT
GGAACCCTGC TGGGAGGCGC GGTGGTCATC GAAAATGTCT TCGCCAGACA GGGACTTGGC
ACACTGGTCA CGCAGGCGGT GATTAACCGC GACTTTCCAG TGGTGCAGGG ATGCGTTCTG
GTGGCAGCAA CCATGTATGT GCTCGTGAAT CTGGCGGTTG ACGTGTTCTA TACGGTGGTC
GATCCCCGGA TTCGCTATTC GTAA
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| Protein sequence | MSAYLIQRVL LTIPILLGIV ILTFFLVHLI PGDAVSAMQG QLKMSAQQME QMREALGLND
PLHVQLGRYL MRLAQGDLGR SLFGNQPVAL LIASNIGATI QLTVAAMAIA IALGAPLGIL
AAVKRGTLWD VAAVVLAMIG VSIPSFWLGL MMIQLFAVTL GWLPIIEERS ARGLIMPAAA
LGLAEAAIIV RLTRATMVEI LNADYVRTAR AKGLFDSVVL WRHALRNGLL PLITMIGMQF
GTLLGGAVVI ENVFARQGLG TLVTQAVINR DFPVVQGCVL VAATMYVLVN LAVDVFYTVV
DPRIRYS
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