Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3834 |
Symbol | |
ID | 5541337 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 5011137 |
End bp | 5013722 |
Gene Length | 2586 bp |
Protein Length | 861 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640895944 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_001433890 |
Protein GI | 156743761 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCACA GAAACCAAAC AATGCCGGAA ACGCCAGACA ATCCCGTCAA TCGGCGAATG CTGGCAAGGC TGCTCCGCTT CCTCTGGCGC CTGTTCCTGG CGTTCGTCAG AGTGACTCTG GTGAGTGTCA TTCTGGCGGT GGCGGCGGCC TTCATCGTGT ATCGCCACTA CAGCCGCGAT CTCCCCGACC CGGCGCAGAT CGGGCGCCAC CGTTCCTCGG AGACCGGCTA CATCTATGCG CGTGATGGGA CCGTGCTCTA CGAACTGATC GATCCCTTGA GCGGCAGGCG AACCGTTGTT CCGTTCGAAC GCATCCCGCG TATTCTGATT GAGGCAACGG TCGCCGTTGA AGACGCCGAT TTCTGGGAGA ACCCCGGCGT CGATCTGCGC GGTATTCTGC GCGCCCTGAT TCTCAACTAT CAGGCAGGCG ATATCGTCAG TGGCGGTTCG ACGATTACCC AGCAGTTGGT GCGGAATGTG CTGCTGTCGC CGGACGAGCG CGATGCTCTC TCTCTGGATC GCAAACTGCG CGAAGCCATT CTGGCAATCG AAGTATCGCG TCGCTACAGC AAAGAGCAGA TTCTCGGCAT CTACCTCAAT GAAGTCTACT ACGGCAACCG GGCATACGGC GTTGAGGCGG CGGCGCAGTC CTATTTCGGC AAACATGTGT GGGAATTGTC GCCCGGCGAA GCCACGCTGC TCGCCGGTCT TCCCCAGGCG CCAACGACGC TCAACCCGCT GCTCAATCTG GAAGGCGCGA AGCAACGCCA GCGCGTTACC CTCAATTTGA TGGTTAAGTC CGGTTACCTG ACCGAATCGC AGGCGCAGGC GATTTTCGAC GAACCGCTCC GTTTTGCCTC GACCGAAACC GTCATTGCTG CGCCGCACTT TGTGTTCTAC GTGCTGCAAC TGCTCGAAGA GCGGTATGGA CCGGACACGC TGTATCGGAG CGGGTTGCGC GTCGTGACCA CACTCGACCC AATGTGGCAG GCGGAAGCCG AACGCATTGC CCGGCAGTGG ATCCGCGCGG GAGGACCGGG ATACACGCCG CTGCGCGAGC GTGGCGCTAC GAATGCCGGG GTGGTGATGC TCACGCCCGA TGCGCAGATT ATTGCCATGG TCGGTAGCAT CGACTACAAC GACCCAACAA TCGACGGGCA GGTCAATGTG ACCCTCGCGC CGCGCCAGCC GGGTTCTGCG TTGAAGCCGA TCGTCTATGC GGCTGCGCTT CAGCGTGGAT GGACGCCAGC TACGCTCATA TGGGATACGC CGGTTGTCTA TCCGGCCGGT GATGGGACCG TCTATGCCCC GCGTAATTAC GACAATGCAT TCCATGGTCC GCAACGCTTG CGCATGGCGC TGGCAAACTC GCTCAATATT CCCGCAGTCC GCGCGCTGGA ATACGTCGGC ATCGAGGCGT TTGTATCGCT TGCTCATCGG ATGGGCATCA CGACGCTGAA AGATCCGGAG CGCTACGGGT TGCCGTTGGC GCTCGGCGCC GGCGAAGTTC GCCTGCTCGA TCTGACGGCG GTCTACAATA CCTTTCGCAA CGGTGGGCGC TATCGTCCGC CGGTCGCCAT CCTGAAGGTG ACCAATGCGC GCGGTGAAAC GCTCGAAATG CCCGGAGACG CTCCTGGTCG CCAGGCGCTC GGTGATCAGG GCGAGCAGAT CGCGTACCTG ATCACCGACA TGCTCAGCGA CAACGCAGCA CGTCGCTTCA TGTTCGGGCG CAATAACGTG ATGGAACTCC GTGATGGACG ACCGGCAGCG GTAAAGACCG GCACCAGCAA CGAATGGCGC GACTCCTGGA CCGTCGGCTA TACGCCCGAC GTCACGGTTG GCGTCTGGGT CGGCAACAAC GACAATGCAC CGATGCAGGA AGTCGCCGGA TCGAATGGCG CCGGCGTCAT CTGGCGCGCC ATCATGGAAC GATACCACGA AGGGCGCCCT ATCCTGGCAT TCGAGCCGCC AGAGGGTGTT CAAGAAGTGC TAATCTGCGC CGACACCGGC GCGCTTGCCG GCGACCATTG CCCTCGACCG CTCAAAGAGC GATTCGTCGC GGGAACCGAG CCGCGCACCA GCGATGTGAC CCTGCTGACC GTTGGCGTGT CCGATGACGG GAGATGCCTG GCAGCATCAT ACACGCCGCC AGAGCGCGTC CGCCAGGTGA CATTCGTCGT GTATCCGCTG GCATTCCGCG CATGGGCGGA GTCGAATGGC ATTGCGCAAC CGCCACAACA GTACTGTCCG CCGCCAGAAG CCGGTGTTGG ACGTGAAGGC GGCAGCATTG CGCAGATCAC CCAACCTGCC GCCAATACGA TGGTGCGCGA TCCGTTGGTG TATGTGCGTG GCGTGGCGCT TGGCATCTAT GCGCTTGAAA TTGCGCCCGG ATGGACTCCT GTCGCAGAAT GGCGCACGAT TGCGCGTGGT GAAGCGATCC GTGACGGCAT TCTGGGCGTC TGGCAGACGG GGGACTATGC AGCGGGAGAA TACATGCTGC GGCTGCGGGT GACGACCGCT GAGGGCATCC TGATCGAACA ACGGGTGCCG GTGCGGCTCG AACCGGTGGA GTCGCGCACC CCCTGA
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Protein sequence | MRHRNQTMPE TPDNPVNRRM LARLLRFLWR LFLAFVRVTL VSVILAVAAA FIVYRHYSRD LPDPAQIGRH RSSETGYIYA RDGTVLYELI DPLSGRRTVV PFERIPRILI EATVAVEDAD FWENPGVDLR GILRALILNY QAGDIVSGGS TITQQLVRNV LLSPDERDAL SLDRKLREAI LAIEVSRRYS KEQILGIYLN EVYYGNRAYG VEAAAQSYFG KHVWELSPGE ATLLAGLPQA PTTLNPLLNL EGAKQRQRVT LNLMVKSGYL TESQAQAIFD EPLRFASTET VIAAPHFVFY VLQLLEERYG PDTLYRSGLR VVTTLDPMWQ AEAERIARQW IRAGGPGYTP LRERGATNAG VVMLTPDAQI IAMVGSIDYN DPTIDGQVNV TLAPRQPGSA LKPIVYAAAL QRGWTPATLI WDTPVVYPAG DGTVYAPRNY DNAFHGPQRL RMALANSLNI PAVRALEYVG IEAFVSLAHR MGITTLKDPE RYGLPLALGA GEVRLLDLTA VYNTFRNGGR YRPPVAILKV TNARGETLEM PGDAPGRQAL GDQGEQIAYL ITDMLSDNAA RRFMFGRNNV MELRDGRPAA VKTGTSNEWR DSWTVGYTPD VTVGVWVGNN DNAPMQEVAG SNGAGVIWRA IMERYHEGRP ILAFEPPEGV QEVLICADTG ALAGDHCPRP LKERFVAGTE PRTSDVTLLT VGVSDDGRCL AASYTPPERV RQVTFVVYPL AFRAWAESNG IAQPPQQYCP PPEAGVGREG GSIAQITQPA ANTMVRDPLV YVRGVALGIY ALEIAPGWTP VAEWRTIARG EAIRDGILGV WQTGDYAAGE YMLRLRVTTA EGILIEQRVP VRLEPVESRT P
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