Gene Rcas_3834 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3834 
Symbol 
ID5541337 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5011137 
End bp5013722 
Gene Length2586 bp 
Protein Length861 aa 
Translation table11 
GC content62% 
IMG OID640895944 
Product1A family penicillin-binding protein 
Protein accessionYP_001433890 
Protein GI156743761 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02073] penicillin-binding protein 1C
[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCACA GAAACCAAAC AATGCCGGAA ACGCCAGACA ATCCCGTCAA TCGGCGAATG 
CTGGCAAGGC TGCTCCGCTT CCTCTGGCGC CTGTTCCTGG CGTTCGTCAG AGTGACTCTG
GTGAGTGTCA TTCTGGCGGT GGCGGCGGCC TTCATCGTGT ATCGCCACTA CAGCCGCGAT
CTCCCCGACC CGGCGCAGAT CGGGCGCCAC CGTTCCTCGG AGACCGGCTA CATCTATGCG
CGTGATGGGA CCGTGCTCTA CGAACTGATC GATCCCTTGA GCGGCAGGCG AACCGTTGTT
CCGTTCGAAC GCATCCCGCG TATTCTGATT GAGGCAACGG TCGCCGTTGA AGACGCCGAT
TTCTGGGAGA ACCCCGGCGT CGATCTGCGC GGTATTCTGC GCGCCCTGAT TCTCAACTAT
CAGGCAGGCG ATATCGTCAG TGGCGGTTCG ACGATTACCC AGCAGTTGGT GCGGAATGTG
CTGCTGTCGC CGGACGAGCG CGATGCTCTC TCTCTGGATC GCAAACTGCG CGAAGCCATT
CTGGCAATCG AAGTATCGCG TCGCTACAGC AAAGAGCAGA TTCTCGGCAT CTACCTCAAT
GAAGTCTACT ACGGCAACCG GGCATACGGC GTTGAGGCGG CGGCGCAGTC CTATTTCGGC
AAACATGTGT GGGAATTGTC GCCCGGCGAA GCCACGCTGC TCGCCGGTCT TCCCCAGGCG
CCAACGACGC TCAACCCGCT GCTCAATCTG GAAGGCGCGA AGCAACGCCA GCGCGTTACC
CTCAATTTGA TGGTTAAGTC CGGTTACCTG ACCGAATCGC AGGCGCAGGC GATTTTCGAC
GAACCGCTCC GTTTTGCCTC GACCGAAACC GTCATTGCTG CGCCGCACTT TGTGTTCTAC
GTGCTGCAAC TGCTCGAAGA GCGGTATGGA CCGGACACGC TGTATCGGAG CGGGTTGCGC
GTCGTGACCA CACTCGACCC AATGTGGCAG GCGGAAGCCG AACGCATTGC CCGGCAGTGG
ATCCGCGCGG GAGGACCGGG ATACACGCCG CTGCGCGAGC GTGGCGCTAC GAATGCCGGG
GTGGTGATGC TCACGCCCGA TGCGCAGATT ATTGCCATGG TCGGTAGCAT CGACTACAAC
GACCCAACAA TCGACGGGCA GGTCAATGTG ACCCTCGCGC CGCGCCAGCC GGGTTCTGCG
TTGAAGCCGA TCGTCTATGC GGCTGCGCTT CAGCGTGGAT GGACGCCAGC TACGCTCATA
TGGGATACGC CGGTTGTCTA TCCGGCCGGT GATGGGACCG TCTATGCCCC GCGTAATTAC
GACAATGCAT TCCATGGTCC GCAACGCTTG CGCATGGCGC TGGCAAACTC GCTCAATATT
CCCGCAGTCC GCGCGCTGGA ATACGTCGGC ATCGAGGCGT TTGTATCGCT TGCTCATCGG
ATGGGCATCA CGACGCTGAA AGATCCGGAG CGCTACGGGT TGCCGTTGGC GCTCGGCGCC
GGCGAAGTTC GCCTGCTCGA TCTGACGGCG GTCTACAATA CCTTTCGCAA CGGTGGGCGC
TATCGTCCGC CGGTCGCCAT CCTGAAGGTG ACCAATGCGC GCGGTGAAAC GCTCGAAATG
CCCGGAGACG CTCCTGGTCG CCAGGCGCTC GGTGATCAGG GCGAGCAGAT CGCGTACCTG
ATCACCGACA TGCTCAGCGA CAACGCAGCA CGTCGCTTCA TGTTCGGGCG CAATAACGTG
ATGGAACTCC GTGATGGACG ACCGGCAGCG GTAAAGACCG GCACCAGCAA CGAATGGCGC
GACTCCTGGA CCGTCGGCTA TACGCCCGAC GTCACGGTTG GCGTCTGGGT CGGCAACAAC
GACAATGCAC CGATGCAGGA AGTCGCCGGA TCGAATGGCG CCGGCGTCAT CTGGCGCGCC
ATCATGGAAC GATACCACGA AGGGCGCCCT ATCCTGGCAT TCGAGCCGCC AGAGGGTGTT
CAAGAAGTGC TAATCTGCGC CGACACCGGC GCGCTTGCCG GCGACCATTG CCCTCGACCG
CTCAAAGAGC GATTCGTCGC GGGAACCGAG CCGCGCACCA GCGATGTGAC CCTGCTGACC
GTTGGCGTGT CCGATGACGG GAGATGCCTG GCAGCATCAT ACACGCCGCC AGAGCGCGTC
CGCCAGGTGA CATTCGTCGT GTATCCGCTG GCATTCCGCG CATGGGCGGA GTCGAATGGC
ATTGCGCAAC CGCCACAACA GTACTGTCCG CCGCCAGAAG CCGGTGTTGG ACGTGAAGGC
GGCAGCATTG CGCAGATCAC CCAACCTGCC GCCAATACGA TGGTGCGCGA TCCGTTGGTG
TATGTGCGTG GCGTGGCGCT TGGCATCTAT GCGCTTGAAA TTGCGCCCGG ATGGACTCCT
GTCGCAGAAT GGCGCACGAT TGCGCGTGGT GAAGCGATCC GTGACGGCAT TCTGGGCGTC
TGGCAGACGG GGGACTATGC AGCGGGAGAA TACATGCTGC GGCTGCGGGT GACGACCGCT
GAGGGCATCC TGATCGAACA ACGGGTGCCG GTGCGGCTCG AACCGGTGGA GTCGCGCACC
CCCTGA
 
Protein sequence
MRHRNQTMPE TPDNPVNRRM LARLLRFLWR LFLAFVRVTL VSVILAVAAA FIVYRHYSRD 
LPDPAQIGRH RSSETGYIYA RDGTVLYELI DPLSGRRTVV PFERIPRILI EATVAVEDAD
FWENPGVDLR GILRALILNY QAGDIVSGGS TITQQLVRNV LLSPDERDAL SLDRKLREAI
LAIEVSRRYS KEQILGIYLN EVYYGNRAYG VEAAAQSYFG KHVWELSPGE ATLLAGLPQA
PTTLNPLLNL EGAKQRQRVT LNLMVKSGYL TESQAQAIFD EPLRFASTET VIAAPHFVFY
VLQLLEERYG PDTLYRSGLR VVTTLDPMWQ AEAERIARQW IRAGGPGYTP LRERGATNAG
VVMLTPDAQI IAMVGSIDYN DPTIDGQVNV TLAPRQPGSA LKPIVYAAAL QRGWTPATLI
WDTPVVYPAG DGTVYAPRNY DNAFHGPQRL RMALANSLNI PAVRALEYVG IEAFVSLAHR
MGITTLKDPE RYGLPLALGA GEVRLLDLTA VYNTFRNGGR YRPPVAILKV TNARGETLEM
PGDAPGRQAL GDQGEQIAYL ITDMLSDNAA RRFMFGRNNV MELRDGRPAA VKTGTSNEWR
DSWTVGYTPD VTVGVWVGNN DNAPMQEVAG SNGAGVIWRA IMERYHEGRP ILAFEPPEGV
QEVLICADTG ALAGDHCPRP LKERFVAGTE PRTSDVTLLT VGVSDDGRCL AASYTPPERV
RQVTFVVYPL AFRAWAESNG IAQPPQQYCP PPEAGVGREG GSIAQITQPA ANTMVRDPLV
YVRGVALGIY ALEIAPGWTP VAEWRTIARG EAIRDGILGV WQTGDYAAGE YMLRLRVTTA
EGILIEQRVP VRLEPVESRT P