Gene Rcas_3782 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3782 
Symbol 
ID5541284 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4954067 
End bp4955191 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content55% 
IMG OID640895892 
Productcalcium/cation antiporter 
Protein accessionYP_001433839 
Protein GI156743710 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0387] Ca2+/H+ antiporter 
TIGRFAM ID[TIGR00378] calcium/proton exchanger (cax)
[TIGR00846] calcium/proton exchanger 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.953735 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.133642 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGTCT TGCGCTACAT GCTCATCTTC GTCCCGCTGG CGTTCCTGGC TGAATTGTTC 
TTCCCCAATC CCCTGCTCGT CTTTGCGCTT TCCTGCGTGG CGCTCATTCC CCTTGCCGGT
CTGCTCGGCG AAGCGACCGA AGAACTTGCC ATTCACGTCG GACCGAAAAT CGGCGGTTTG
CTCAATGCCA CTCTGGGAAA CGCCGCCGAA TTGATTATTA CCATCGTTGC GTTGCGCGAG
GGCAAGATCG AACTGGTCAA AGCGTCGATT ACCGGCTCGA TTCTGGGCAA CCTGCTCCTT
ATCCTCGGTC TCAGCCTGCT GCTTGGCGGC ATTCGTCACG GCATTCAGAC GTTCGACCGC
AACCTGACCG GCGTCGCGGC GACGATGATG ATGCTTTCGG TTGTTGGTAT GATGATCCCG
ACATTGTTTG AGTTACTTCG TGAGGTGCAG AGCGGTGCTG TCGATGTCTT CAACACTGAT
GTGCGCGATC CGGCGCTCGA TGCGCTGAGC CTGGGAGTTG CAGCGATCCT GATTGTGCTC
TATGTTCTGA GTCTGATCTT CTCATTTCAG AAACCGGAAC GCGGCATTGG CGCCCCAACC
GGTGTTGATG ATCCTTCTGC CGAAATAGAA CACCATCGGG CAAAGTGGAG CGTGCCCGTT
TCGCTTGGTG TGCTGACGGT CTCGACGATT GCTATCGTCT TTTTGAGCGA ATTTCTGGTC
GGCGCGGTCG AACCGGTGGT GGAGCAACTT GGCGTCAGTG AATTGTTTCT GGGGGTGATT
CTGATCCCTC TGGTTGGCAA CGTCGCAGAG CATATTGTCG GCGTGCAGGT GGCAATGAAA
AACAAGATGG ACCTATCGTT GTCTATTTCG CTGGGGTCCA GCATGCAGAT TGCGTTGTTT
GTCGCGCCGT TGCTGGTCTT TATCAGCCTG CTCTTCGGCA ATGAAATGAC CCTCTATTTC
AGTCTCTTCG AGGTTGCTGC GCTGACGCTG GCAGTGCTCT GCGCTGTGCA GGTATCGGTC
GATGGCGAGA GCAACTGGCT CGAAGGCGCG CAGTTGCTAG CAGTCTATCT GATTGTTGGT
CTTGGGTTCT TTTATGTGGT GACGCCAGGC GTCCATGGCG GCTGA
 
Protein sequence
MNVLRYMLIF VPLAFLAELF FPNPLLVFAL SCVALIPLAG LLGEATEELA IHVGPKIGGL 
LNATLGNAAE LIITIVALRE GKIELVKASI TGSILGNLLL ILGLSLLLGG IRHGIQTFDR
NLTGVAATMM MLSVVGMMIP TLFELLREVQ SGAVDVFNTD VRDPALDALS LGVAAILIVL
YVLSLIFSFQ KPERGIGAPT GVDDPSAEIE HHRAKWSVPV SLGVLTVSTI AIVFLSEFLV
GAVEPVVEQL GVSELFLGVI LIPLVGNVAE HIVGVQVAMK NKMDLSLSIS LGSSMQIALF
VAPLLVFISL LFGNEMTLYF SLFEVAALTL AVLCAVQVSV DGESNWLEGA QLLAVYLIVG
LGFFYVVTPG VHGG