| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3701 |
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| Symbol | |
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| ID | 5541203 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4837476 |
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| End bp | 4840670 |
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| Gene Length | 3195 bp |
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| Protein Length | 1064 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640895812 |
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| Product | SARP family transcriptional regulator |
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| Protein accession | YP_001433759 |
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| Protein GI | 156743630 |
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| COG category | [R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG3629] DNA-binding transcriptional activator of the SARP family
[COG3903] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000037794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGCTACTAT GCTACGAGAA TTTAGAATTC GTGTCGCAGC TCTCGCTCAC TCTATTGGGG
ACACTGGCGA TCACCCTGGA TGGCCAGCCC GTCGCCGGCA TCGAGTCGGA CAAGGCGCGC
GCGCTGCTGG TCCGGCTGGC GCTGGAGCCG GAGCGCGCTT TCCGACGCGA GGCGCTGAGC
GCGCTCTTGT GGCCCGAAGC CGCGCCCGCA CAGGCTTCCC AGAACCTCCG TCAGGCGCTC
TACAACCTGC GCCGCGCCCT CGGCGAAGCC TTTTTGCTGA CGACGCCCCA CACCGTGCAG
TTCAACGCGG CTGCCGACGT GACGGTGGAC GCGCTGACCT GGCGCCGCCT GTGGAGTGAG
ACGCAGACGC ATCGCCACCG CCGCCGCGAG ACCTGCCGTC CCTGCCTGGA ACGCCTGGCG
CAGGCCATCG CCCTCTATCG CGGCGACCTG CTGGCCGGGT TCGCGCTCCA AGATAGCGCA
GAGTTCGACG ACTGGCTGGC CGTCGAGCGC GAACGGCTGC ACGTGCAGGC CCTGGAGGCG
CTGACGTTGC TGGCGAACGC CGCCGAGCGG CGCGGCGATT ACCCTGCCGC GCAGGAGTAC
GTGCGGCGAT TGTTGGCCCT GGAACCCTGG CAGGAGGCCG CGCATCGGCA TCTGATGCGC
CTGCTGGCCC TGGACGGCCG GCGCGCGGCG GCGCTGGCGC AGTTCGAGGT CTGTCGCCGC
GCGCTGGCCG ACGAGCTGGG CCTGGCGCCG GATGAGGAAA CCCGCGCCCT CCACGCGCGC
ATCCGCGCCG GCGAGCCGCT CTCCGCCGCG ATGCCGCTTC CCCCCGCGCC GCCCACCGAC
CTGCCGCTGC AACTCACCTC GTTCATCGGC CGTGAGCGCG AGTTGACGCT GTTGAGCGAG
CGCCTGAGCA ACCCCGCCTA CCGCCTCATC ACCCTCACCG GGCCGGGCGG GGTGGGAAAG
ACGCGCCTGG CGCTGCAACT CGCGGCGACC CTAGCGGAAC AGTTTGCCGA TGGCGTCTCT
TGGATCTCGC TGAGCGACGC CGTCACCGAA AGCAACCTGA TTCTGGCGAT TGCCGACGCG
CTGCACCTGC GCCTTTCCGG CGCACAAGAC CTGCGCGCGC AACTCTTGCA GGCGCTGCGT
CACGACCGGC GCGACCTGCT GCTGGTGCTG GACAATTTCG AGCAACTGTT GCCTGTCGGC
GGCGCGACGC TGGTACTGGA GGTGATGCGC GCCGCCCCGC GCCTCACGCT GCTGGTCACC
TCGCGCGAAC GGCTGAATCT GCAAGCCGAG TCGGTGCTCC CGCTAGAGGG CCTGGGCTAC
GATCTGCCCG CTCCTGACGC GCCGCCCTCC GAAGCCGCGC AGTTGTTCGT CGAGCGCGCC
GGACGTGCCC GAATGGACCT GAGCGTAGGC GCGGCAGACC AGACGATGAT CGCGGAGATT
TGTCATCTGC TGGAAGGCTT GCCGCTGGGC ATTGAGCTGG CCGCCGCTTG GGCCGGTGAA
ATGTCGCTGG AAGGCATCGC TGAAGCCATC ACCGTCACGC GCGATTTCCT CGCCTCCAGC
AGTCCCGACA TGCCCGACCG TCACCGCAGC CTGCGCGTGG TCTTTGAAGG CTCCTGGCAA
TTGCTTTCTC CGGAAGAGCA GTTCGCGCTG ATGCGGGTTT CCATCTTTCG CGGCGGCTTT
CAATCTGAGG CCGCGCAGCA CGTCGCCGGG GTGAGCGCGG CAATGCTCAG CCGTCTGGTG
CGCAAATCGT TGCTCTTCCT GGACGGGCCG CGCGTCCGCT ACGGGCTGCA CGGCGACATC
CGCTACTATG CGGCGGAGAA ACTGGCGGCG CAGCCGTCCA CTGCCCAGGA GATGGCCGCG
CGTCACGCCG CGTATTTTGC CGACCTGGTG CAGCAGCGAG AACAGGCCCT GCGCGGACGC
GCGCAGCAGG CAGTGCAGGC CGAGCTGGAA CCCGAATGGC AGAACGTGCT CGCCGCGTGG
CAATGGGCCA TCGCCCACGG CGACGAGGCG CTGCTCACCC GCCTGACCCA CGGGCTGTTT
GCCTTTTGCG AAGCCAAATC CTGGTTCCGC GAAGGTGCGG CCCTCTTCCA GCCCGCTTTA
GAGCGGATGC GGGAAGCGGC CCGCGCCGAC CTGGCGGCCG CCGCGCTGCT CCGTCGCCTG
CTGGGGCGGC AGGCCGTCTT TTGCCGACAA CTCTCGCAGT ACGCGCAAGC GCATCAGTTA
ATTGAAGAGG GCCTAGCCTT GCCGGGCCTG CCCGACGACG AGGAGCGCGC GTTCCTGCTG
TATCAAAAGT CCTGGGTGGA TTTTTTGCAG GCGCGGTACG CGCAGGCGCG CCAGTGGGCC
GAGGCAAGCC TGGAGCGTTA CCGCGCACTG GGGCAGCCGG TGGGCATCGG CGACAGCCTC
TATATGCTCG GCTGGACGGC CTACGAGTTG GGGGATTTTG CCGCCGCCGA GGCGCTCTGC
CTGGAGGCGC GGGCGGTGTG TGCGCAGGCC GATTATGCCT GGGGAGTGCA GTACGCCATC
TATGGGCTGG GGCTGGTGCG ACGCGCGCAG GGGGACTATG CCGCCGCCCG CCGCTGTTTC
GAGGAGAACA TGACGTTTTG CGACGCCATC GGCTACCTGT GGGGCGTGGC ACAGGCGCGC
ATCAACCTGG GGCTGGTGGC ACTGGCCGAG GGCAACGTGG AAGAGTCCGA AGCGCACTTT
CAAAAGAGCC TGCTCATCGG CGAGCAGATC GGCAATGCAT GGGTCAACGC GCAAAGCCAG
AAGGGCCTGA GCGATGCGGC TTTGGTGCGC CGCGACCTAT CCACTGCGCT GACCCTGGCG
GAGCGCAGCC TGGCGCTCTA TCAAGCGATG CAGGATCGGG ATGGGATGGC GGATAGCTTG
CTGCTGCTGA GCCAGGTCGC GCTGGCAAGC GGTGACCTCC CCGCCGCCCA CCGCGCCCTG
ACGGAAGCCG AGGGGTTGAT CCAGGCTACG GAAAACGGCT TCCGCGCCGC CAGGGCGCTG
GTTCAGCGGG TGGGCATCCT GCTGCGGGAA GGGGAAACTG CGCAGGCGCG GGCGCTGCTG
GAGGAAACGC TGCGCCATCC GGCCTGCGAG GCGTCCATCC ACAAGCGGGC TATGGAGGCG
CTGCGTGGAG CCGGCTACCT TGCCCCGCCT GCCGAAAGCG ACATTCGTCA CAGAACACCT
GAGTGGAAGC CATAG
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| Protein sequence | MLLCYENLEF VSQLSLTLLG TLAITLDGQP VAGIESDKAR ALLVRLALEP ERAFRREALS
ALLWPEAAPA QASQNLRQAL YNLRRALGEA FLLTTPHTVQ FNAAADVTVD ALTWRRLWSE
TQTHRHRRRE TCRPCLERLA QAIALYRGDL LAGFALQDSA EFDDWLAVER ERLHVQALEA
LTLLANAAER RGDYPAAQEY VRRLLALEPW QEAAHRHLMR LLALDGRRAA ALAQFEVCRR
ALADELGLAP DEETRALHAR IRAGEPLSAA MPLPPAPPTD LPLQLTSFIG RERELTLLSE
RLSNPAYRLI TLTGPGGVGK TRLALQLAAT LAEQFADGVS WISLSDAVTE SNLILAIADA
LHLRLSGAQD LRAQLLQALR HDRRDLLLVL DNFEQLLPVG GATLVLEVMR AAPRLTLLVT
SRERLNLQAE SVLPLEGLGY DLPAPDAPPS EAAQLFVERA GRARMDLSVG AADQTMIAEI
CHLLEGLPLG IELAAAWAGE MSLEGIAEAI TVTRDFLASS SPDMPDRHRS LRVVFEGSWQ
LLSPEEQFAL MRVSIFRGGF QSEAAQHVAG VSAAMLSRLV RKSLLFLDGP RVRYGLHGDI
RYYAAEKLAA QPSTAQEMAA RHAAYFADLV QQREQALRGR AQQAVQAELE PEWQNVLAAW
QWAIAHGDEA LLTRLTHGLF AFCEAKSWFR EGAALFQPAL ERMREAARAD LAAAALLRRL
LGRQAVFCRQ LSQYAQAHQL IEEGLALPGL PDDEERAFLL YQKSWVDFLQ ARYAQARQWA
EASLERYRAL GQPVGIGDSL YMLGWTAYEL GDFAAAEALC LEARAVCAQA DYAWGVQYAI
YGLGLVRRAQ GDYAAARRCF EENMTFCDAI GYLWGVAQAR INLGLVALAE GNVEESEAHF
QKSLLIGEQI GNAWVNAQSQ KGLSDAALVR RDLSTALTLA ERSLALYQAM QDRDGMADSL
LLLSQVALAS GDLPAAHRAL TEAEGLIQAT ENGFRAARAL VQRVGILLRE GETAQARALL
EETLRHPACE ASIHKRAMEA LRGAGYLAPP AESDIRHRTP EWKP
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