| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3643 |
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| Symbol | |
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| ID | 5541145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4765645 |
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| End bp | 4766976 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640895763 |
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| Product | ABC transporter related |
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| Protein accession | YP_001433710 |
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| Protein GI | 156743581 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000162695 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000834131 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGCAGTTC CAACCGCAGA CATTCTCCCT CAGGAAGCGG CGCCACTCCC CGCACCGACC
GACGAGGTGG TCATCAGCGT CCAGAACGTC GGCAAAATGT ACCGCATCTA CGACCAACCG
CAGGATCGGC TGAAGCACAT GCTCTTCTGG CGGTTCGGCA AGCATTACGG GCGCGAGTTT
TGGGCGCTGC GCAACGTCAG TTTCGAGGTG CGGCGCGGCG AAACGGTGGG GATCATCGGG
CGCAACGGGA GCGGCAAGAG CACGCTGCTC CAGATCATTG CCGGCACCCT GGCGCCGACC
GAAGGCGAAG TGCGGGTGAA GGGGCGCGTG GCGGCGCTGC TTGAACTCGG CAGCGGCTTT
AATCCCGAAT TCACCGGGCG CGAAAATGTC TACCTCAACG GCGCGATCCT GGGGCTGAGC
CGCGACGAAA TCGACGCGCG CTTCGACGAC ATTGCCGCAT TCGCAGACAT CGGCGAGTTC
ATTGATCAGC CGGTGAAGGT GTATTCGAGC GGCATGTATG CGCGGTTGGC GTTTGCGGTT
GCTGTCTCGC TCGATCCTGA CATACTGATT GTTGATGAAA TTCTTGCTGT GGGTGATCTT
GCGTTTCAGC AGCGTTGTGC GACAAGATTG CGGCAACTTC GAGATGAAGG GTTGACGCTT
TTGTATGTCA GTCACTCGCC TGACTCTATC AAGAGCGTTT GTCAAAATGC TTTGCTACTA
GTTGAAGGAA AAGTTTTTTA CAAAGGGCAT GCGGAAGAGA CGATGAATAA GTATCTCAAC
CTGATTCGTG AAGAGACAAA TGCAGCTATG TTGTCGAAAG AGGCACATCT TCCTCGATAT
ATACCATTTC ATTCTCTGGC AAAAGCGAAG CTTCGCTATG GGTCAGGTCA CGTTCAAATC
GAAAGAGTGG AATTGTTGGA CGAGGACGGA CAATTCTCTC ATTCTTTTAG ATTTGGTGAT
ATGATTACGA TTCTAGTAGA GTTCCGTTCG TATATCGAGG TGAACCATTT TAGTTGTTCG
TTTCTAGTAA GGGATTCTAC AGGCGTTGAT CTTTTTGGGA CAACTACTTT TGATGAGAGA
ATAGAGTTTC CAATACTCAG AGTTGGAAAC AGAGGGCTTG TTCGATTCAA ATTTCTCAAT
CAACTGAGGA TTGGTAACTA TGGTGTGTCA GTGGCTCTGA ATCGTACTTC GCAAAGAGAT
TATTCTGATA ATATTCTTTT CGATCAGATA GACGGTGCTG CTGTGTTTTC CGTGGTGCCT
GATATTTCCA GGCCGGTGCA TTACAAATTC TTTGTTCCGA TTTCGATAGA TTATGAGGTA
ACGTTTGAAT GA
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| Protein sequence | MAVPTADILP QEAAPLPAPT DEVVISVQNV GKMYRIYDQP QDRLKHMLFW RFGKHYGREF
WALRNVSFEV RRGETVGIIG RNGSGKSTLL QIIAGTLAPT EGEVRVKGRV AALLELGSGF
NPEFTGRENV YLNGAILGLS RDEIDARFDD IAAFADIGEF IDQPVKVYSS GMYARLAFAV
AVSLDPDILI VDEILAVGDL AFQQRCATRL RQLRDEGLTL LYVSHSPDSI KSVCQNALLL
VEGKVFYKGH AEETMNKYLN LIREETNAAM LSKEAHLPRY IPFHSLAKAK LRYGSGHVQI
ERVELLDEDG QFSHSFRFGD MITILVEFRS YIEVNHFSCS FLVRDSTGVD LFGTTTFDER
IEFPILRVGN RGLVRFKFLN QLRIGNYGVS VALNRTSQRD YSDNILFDQI DGAAVFSVVP
DISRPVHYKF FVPISIDYEV TFE
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