| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3635 |
|---|
| Symbol | |
|---|
| ID | 5541137 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4751001 |
|---|
| End bp | 4751957 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640895755 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001433702 |
|---|
| Protein GI | 156743573 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.287506 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0415744 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGACCC TGCACAAACT CGAACTGTTT GTCTACGTCG CGCAGGCGGG CAGCATCAGC
AAAGCGGCGG ATCATTTCCT GATGTCGCAG CCAAACGTGA GCCAGCACAT TCAGGACCTG
GAGGCCGAGT TCGGCGAACA GTTGCTGATC CGCAAGCACC GCGGGGTCGA ATTGACGCCT
GCTGGCGAAA CGCTTCTCCA GTATGCACAG GAGATCTTCA GGTTAGTGGC GGAGGCGCGG
CTGGCGATCA CCGATGTGTC GCGTTTGAGC GGGGGCAATC TGGCGCTTGC GGCCACACCC
GGGGTTGGTA TTTATGTGCT GCCTGAGTGT GTGGAACAGT TCCGCATGCG CTATCCGCAG
TTTACGGTAT CGATCAAGAC CGGTGTCACC GCCGAAGTTA TCACGTTCCT GATCGCAAGC
CAGTGTGAGG CGGGTTTTAT CGAGGGTGAA CTGGACGGCA TTCGTCTGCC GCCGCACTTC
GGGGTGCTGG TGCTGGATAC GGTGCAGCAG TATGTTGTTA TCAGCCATGC GCATCCCTGG
TGGAACGCAA CGTCCTTGAG TATTCAGGCG CTCGACGATC AACCGGTGAT TCTGCGTCAG
ATCGGCAGCC AGAGCCGTGC CTGGCTCGAC AAGTTCCTGA AAAGCCACGG TGTCCGATTG
CGGCATGTGG GGGAATTCGA CAATCCCGAA ACCATCAAAC GCGCATTGCT GGCGGGCAAC
GCCTTTGCCA TCCTGCCCGC CTATGTGGTG CGTCACGAGG TGGATCTAGG CGTCTTGCGT
CTACTGCCGG TGAACGATTG TGATTTGCAG CGCCAGTTGA AATTGATCTG GAACAAAGAC
TGGCCCCTTT CGCCCATTAC CTATGCGTTC TTGCGACATT TGGCTACTGA TTACCCATCG
GTGCATGCTC TCCTCGACTC CTCTGCTCCC CGTCAGCCTC ACAGAGGCAG GGTGTGA
|
|---|
| Protein sequence | MLTLHKLELF VYVAQAGSIS KAADHFLMSQ PNVSQHIQDL EAEFGEQLLI RKHRGVELTP
AGETLLQYAQ EIFRLVAEAR LAITDVSRLS GGNLALAATP GVGIYVLPEC VEQFRMRYPQ
FTVSIKTGVT AEVITFLIAS QCEAGFIEGE LDGIRLPPHF GVLVLDTVQQ YVVISHAHPW
WNATSLSIQA LDDQPVILRQ IGSQSRAWLD KFLKSHGVRL RHVGEFDNPE TIKRALLAGN
AFAILPAYVV RHEVDLGVLR LLPVNDCDLQ RQLKLIWNKD WPLSPITYAF LRHLATDYPS
VHALLDSSAP RQPHRGRV
|
|---|
| |