| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3588 |
|---|
| Symbol | |
|---|
| ID | 5541089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4683571 |
|---|
| End bp | 4685811 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640895707 |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | YP_001433655 |
|---|
| Protein GI | 156743526 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAC GTCGGATTCA TTCAGTCAGT ATGGATCTTG CAGGCCGCAC GCTGACACTG
GAAACCGGGC GCTTCGCTGA ACAGGCGAAC GGCGCGGTGG TGGTGCGGTA CGGCGACACG
ATGCTGCTGG CAACGGCAGT GGCATCGAAA GAACCGCGCA CTGATACGGA TTTCTTTCCG
TTGACGGTTG ATTACGAAGA AAAAATGTAC GCTGCGGGCA AAATTCCCGG CAGTTTTTTC
AAACGTGAAG GCAAGCCGAC CGAAGGCGCG ATCCTGACAG CGCGGCTCAC CGACCGCCCA
CTGCGCCCCC TCTTCCCGGA AGGCTACCGC AATGAAGTGC AGATCATCGT CACGACCTTT
TCGATCGATA TGGTCAACGA TCCGGCGCCG TTGTCGATCA TCGCCGCTTC AGCGGCGCTG
GCGATTTCCG ACATTCCGTT CCTCGGTCCG GTCGGAGCGG TGCAGGTCGG GTATATCGAC
GGCGCGTTGC AGATCAACCC GCCAATGCCC AACATGGCGA ACAGCGACCT CGACCTGGTG
GTGGCCGGCA CCAAAGAGGC GGTGCTGATG GTCGAGGCAG GGGCGAATGA ACTTCCCGAA
GAGGTGATGC TCGAAGCGGT CATTCAGGGA CATCAGGTAT GCAAGCAGAT TTGCGATTTG
CAGAACGAAT TGGTGAAACT GGCTGGCCGC CCGAAGAAGG AATTCGTCCC GCCGCCGGTT
GATACGTCGC TCGAAGAGGC GATCCAGCAG TGGCTGGGAA ACCGATTGTA CGAGGCGATC
ACCGACGCGA ACAAGATGGT GCGCGATGCG CAGACCGAAG CGCTCAAGCG TGAGGTGATC
GCGCATTTCA CTGCCGATGA GCCGGAAGAA GAACTCGAAG CGCGCACGGC TGCGGTCTCT
GCCGCATTCG AGAACATTCT GTACGAGGAA GTGCGGCGCA TGATCCTCGA GCGCGGCGAA
CGCGTCGATG GGCGTGGTCC GAAAGACATT CGCCCGATTT CGGTAGAGGT GGGGCTGATC
CCGCGCGTAC ACGGATCGGG GTTGTTCACC CGCGGGCAGA CGCAGGTGTT GACGCTGGCG
ACGCTCGGTT CGCCGGCTGA GGAGCAACGC CTTGATGATC TCGGCATCGA AACGGCTAAA
CGGTACATTC ATCACTATAA CTTCCCGCCG TTCAGCACCG GCGAGATCCG CCGCCTCGGT
TCGCCGCGCC GCCGCGACAT TGGCCACGGC GCGCTGGCGG AACGATCACT GCTCGCAGTG
CTGCCGCCAA AAGAGGAGTT CCCCTACACC ATGCGCCTGG TGTCCGAAAC GCTCTCCTCG
AACGGCTCCT CGTCGATGGC GTCAGTGTGC GGTTCGTCAC TGGCGCTCAT GGATGCAGGC
GTGCCGATCA GGGCGCCGGT CGCCGGGATT GCAATGGGGT TGATCACCGG CAAAGACGGT
CGCTGGCGCG TGCTGACGGA TATCCAGGGC ATTGAGGACC ATCTGGGCGA TATGGATTTC
AAGGTCGCCG GCACGGCAAA GGGGATCACC GGGTTGCAGA TGGATATCAA GACTACCGGG
ATTACCTACG AGATCATGCG CGAGGCGTTC GCTCAGGCGC GCGAGGGTCG CCTGCACGTG
CTCGAGAAGA TGAATGCGGT GATCAGCGAG CCGCGCAAGG AACTCTCGCC GTATGCGCCG
CGCATCATCA CGCTCCAGAT CAACCCGGAG AAGATCGGCG CACTTATTGG TCCCGGCGGC
AAGACGATTC GCAGTATTAC GGAAGCCACC GGCGCGCAGA TCGATATCGA GGAAGATGGG
CGGGTCTATA TTTCAACGGC TGACGCCGCC GCTGCGCAAC AGGCAGTGGC GATGGTCGAA
GCGCTGACGC GCGAGATCAA GGTCGGCGAT ATTTTCCTCG GTAAGGTGGT GCGGATTATG
CCATTTGGCG CGTTTGTCAA TCTTGCGCCG GGTAAGGACG GCATGGTGCA CGTCTCCGAA
CTCGACGTCG GTCGGGTCGA GAATGTCGAA GACGTGATCA AGATGGGCGA TGAGATCAAT
GTGATGGTCA TCGGCATTGA GCCTGGCACG GGCAAAGTGA GCCTGTCACG GCGCGCGTTG
CTCACCGGCG AGACGGCGGA GGATCGCCGG GCAGCGGGCG CGGGGCGCGG TCTGCGTGAT
GGTGGGCGCA GTAGTGGCAG CGAGCGCAGC GGCGACCGCA GTCCGCGCAG CGATGATCGT
CCGCGCCCGC GCCGACGGTG A
|
|---|
| Protein sequence | MSERRIHSVS MDLAGRTLTL ETGRFAEQAN GAVVVRYGDT MLLATAVASK EPRTDTDFFP
LTVDYEEKMY AAGKIPGSFF KREGKPTEGA ILTARLTDRP LRPLFPEGYR NEVQIIVTTF
SIDMVNDPAP LSIIAASAAL AISDIPFLGP VGAVQVGYID GALQINPPMP NMANSDLDLV
VAGTKEAVLM VEAGANELPE EVMLEAVIQG HQVCKQICDL QNELVKLAGR PKKEFVPPPV
DTSLEEAIQQ WLGNRLYEAI TDANKMVRDA QTEALKREVI AHFTADEPEE ELEARTAAVS
AAFENILYEE VRRMILERGE RVDGRGPKDI RPISVEVGLI PRVHGSGLFT RGQTQVLTLA
TLGSPAEEQR LDDLGIETAK RYIHHYNFPP FSTGEIRRLG SPRRRDIGHG ALAERSLLAV
LPPKEEFPYT MRLVSETLSS NGSSSMASVC GSSLALMDAG VPIRAPVAGI AMGLITGKDG
RWRVLTDIQG IEDHLGDMDF KVAGTAKGIT GLQMDIKTTG ITYEIMREAF AQAREGRLHV
LEKMNAVISE PRKELSPYAP RIITLQINPE KIGALIGPGG KTIRSITEAT GAQIDIEEDG
RVYISTADAA AAQQAVAMVE ALTREIKVGD IFLGKVVRIM PFGAFVNLAP GKDGMVHVSE
LDVGRVENVE DVIKMGDEIN VMVIGIEPGT GKVSLSRRAL LTGETAEDRR AAGAGRGLRD
GGRSSGSERS GDRSPRSDDR PRPRRR
|
|---|
| |