| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3563 |
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| Symbol | |
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| ID | 5541064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4651600 |
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| End bp | 4653654 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640895682 |
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| Product | glycoside hydrolase clan GH-D |
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| Protein accession | YP_001433630 |
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| Protein GI | 156743501 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3345] Alpha-galactosidase |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.255741 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCATCC CCGCCACGCT CGATCACTCC ACTGCTGGAC TTGTCTGCCT GCTGCGTCTT
ATTCCACACA TCGGGCTGAT GCGTCTCGGG CTGGCGCATG AGTCGTGGGC GTTGGATTCA
TCGGCGCTCT TTGCGGCAGT GATTGATGGA CAATTGTTCG ATGCACAGAC ACCGGGCGCC
CAGGTGCGGC ATGTGTCAGA GTCTGAAACG CCGCCTGGCA TGCGCCACGT GTGTGTTGAA
CTGGCATATG CCGATTCCGG GATCGTCGTT GCGTATCATA TCGTAACCTA TGCCGATAGT
GCGGCGTTGG AGACATGGAT CGTCGTGCAG AATGAGGGAG ACGTACCGCG TCGCGTGACC
CGTCTGGACT CGCTGGCGCT CGATCTTCCT CCCGATGGAT ACCATCTCTG CGCCTTTACC
GGCGCATGGG GCGCAGAGTT CGAGCCGCAG CGCATGATCC TCAATAGCGC CATCACCCTG
GAAAGCCGGT CTGGACGCTC ATCGCACGGC CATCATCCCT GGTTTACGCT TGTGCGCAAT
GGTCGCTCGC TGATGTCCGG CATGATTGCG TGGTCGGGCA ACTGGGTGAT CCGTTTCACG
CCAAAGCTGG ATGGCGCTCT CGCGCTGTCG GGCGGGTTGC ACAACTGGGA ATTCGCCGTC
GATCTTGCGC CGGGCGCATC GGTCGCGGCG CCGCCGGTGA CACTGGCGTT CGCAACAGGC
GCCGATCTCG ATGAGACGGC GGTTCAGTTT GCGCGTTTGG GACGGCAGTT CTGGTATCCG
CGCAATGCGC TGGCGGATGC GCTGCCGGTC GAGTGGAACC ACTGGTGGGC ATACGAAGAC
CGCGCACTCG ATGAGGCGAC CTTCCGCGCC AATGTCGATG TCGCGGCGCG CCTGGGCATC
GAGGTATGCA CCCTCGACGC CGGATGGTTC GGTGCGCCGG ACGCCGATAC GCACTGGTAC
GAACAACGCG GCGACTGGGA TAGGGTCAAT ACTGCGCGCT TCCCGTCCGG CATTCGCGCA
CTTGCCGATG ATGTCCACGC GCATGGCATG CGTTTCGGCA TCTGGTGCGA AATTGAGGGG
CTTGGCATCC ACGCGCAACT GGCAGAGCGG CATCCTGAAT TCATCGCCAT GCGCGACGGT
GAACGCCTTG GGTACGTCTG CCTTGGCAAT CCGGCGGCGC AGCAGTGGGC ATTCGAGACG
CTCGACCGTC TTGTGCGCGA AAACGGGTGC GACTGGATCA AACTGGATTT TAATCTCAAC
CCTGGCGCCG GCTGCAACCG CACCGATCAT GGGCATGGCG CGGAAGACGG ATTGTATGCC
CACTATCGCG GATACTATGC GCTCCTCGAC CGGTTGCGCG CCACGCACCC CGAGGTCGTA
CTGGAAAATT GCTCGTCGGG CGGGCTGCGC ATCGATCCGG GCATCGCGCG CCGCACGCAC
ATGGCATTCC TGAGCGACCC GGACTGGCCC GAACACAGTT TGCAGGTGTT TTGGGGCGCA
ACCTGTATGC TCGCACCGGA TGCCTGCCTG CACTGGGGCT ACAGTGAGTG GGCATTTGCG
GAACATCCGA GCCAGACATT CAATCCGTGC GATCCGGCGC TTCAGCCGCA CCAGGTCGAT
TGCTACACCC GCATTTCGAT GCTGCGGCGC TTTGGCTTCT CGCAGCGTCT GCCTGATCTG
CCGGAATGGG TCGCGCAGCG GTACGCTGAA CATATTCAGT TCTACAAAAC GGTCATGCGG
CGCTTTGTGC GCGAGGCGGA TATGTACCGC CTGACCGGGC AACCACTTGG CGAGGGGCGT
GGCGACCGCT GGGCCGGATT TCAGTACCGG ATGCCGGACG GCAACGAGCA TCTGATCGCG
ATCTTTCGCC TGCCCGGCGG AGAACCATCG CGCGCGCTGC GCTTGAAACA CCTGCAACCG
GATCGCGTCT ATACCCTTTC GTGGATCGAT ACCGGGCATC GGGCGCAGAT GAACGGCGCT
ACTTTGATGG ATGCCGGGCT GCATGTCGAG AACCTGCCGG AAGAAGGATC GGCCATCGTG
CTGATCCACG GATGA
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| Protein sequence | MTIPATLDHS TAGLVCLLRL IPHIGLMRLG LAHESWALDS SALFAAVIDG QLFDAQTPGA
QVRHVSESET PPGMRHVCVE LAYADSGIVV AYHIVTYADS AALETWIVVQ NEGDVPRRVT
RLDSLALDLP PDGYHLCAFT GAWGAEFEPQ RMILNSAITL ESRSGRSSHG HHPWFTLVRN
GRSLMSGMIA WSGNWVIRFT PKLDGALALS GGLHNWEFAV DLAPGASVAA PPVTLAFATG
ADLDETAVQF ARLGRQFWYP RNALADALPV EWNHWWAYED RALDEATFRA NVDVAARLGI
EVCTLDAGWF GAPDADTHWY EQRGDWDRVN TARFPSGIRA LADDVHAHGM RFGIWCEIEG
LGIHAQLAER HPEFIAMRDG ERLGYVCLGN PAAQQWAFET LDRLVRENGC DWIKLDFNLN
PGAGCNRTDH GHGAEDGLYA HYRGYYALLD RLRATHPEVV LENCSSGGLR IDPGIARRTH
MAFLSDPDWP EHSLQVFWGA TCMLAPDACL HWGYSEWAFA EHPSQTFNPC DPALQPHQVD
CYTRISMLRR FGFSQRLPDL PEWVAQRYAE HIQFYKTVMR RFVREADMYR LTGQPLGEGR
GDRWAGFQYR MPDGNEHLIA IFRLPGGEPS RALRLKHLQP DRVYTLSWID TGHRAQMNGA
TLMDAGLHVE NLPEEGSAIV LIHG
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