| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3449 |
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| Symbol | |
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| ID | 5540948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4505191 |
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| End bp | 4506825 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640895567 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_001433517 |
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| Protein GI | 156743388 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.422145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACACT TTGCCCAACT GTACACCGAT CTCGATGAGA CCACCAGAAC CGGCGCGAAG
GTCGAGGCGC TGATGCGCTA TTTTGAGCGC GCAGAACCGG CTGACGCTGC CTGGGCGATC
TTCTTCCTCA TTGGTCGGCG CGTGCGTCAG GCTGTGCCGT TGCCGACGCT CCGCGCCTGG
GCGGTCGAGG CGGCCGGCAT TCCCGACTGG CTCCTTGGCG AGTGCTACGA CGCCGTCGGC
GACTTTGCCG AGACGGTCGC GCTGTTGCTG CCGGAACCCG GCGAGTGGTC GGTGGATGTG
GACCGGTCGG TTCTGTCGTT TGAAGGTCCG CAGCCGCTCC ATCGCTGGGT CGAGGATGTT
CTGATCCCGC TGCGTGATCG GGAGGAGGCA GTGCAGCGCG CGATTGTGCG TGCTGTATGG
GCGACCCTTG GCGGAACCGA GCGTTTTGTC TGGAACAAAT TGATCACCGG CGCATTTCGG
GTTGGCGTCT CACAACAACT GGTTGTGCGG GCGTTGGCGC GCGCCAGCGG TACGGACCCT
GCTGCAATTG CGCACCGCCT GATGGGTGAA TGGCAACCGT CCGCCGCCTT CTACCGGGCG
CTGCTGGCGC GCGAGACTGC CGACGCCGAT GTGAGTCGTC CATATCCCTT CTGCCTGGCA
CACCCGCTCG ATGATCCGCC CGAAACGTTG GGATCAATCG ACGAATGGCA GGCGGAATGG
AAGTGGGACG GCATCCGCAT CCGGTTGATC CGCCGCGCCG GGCAAACCTT TCTCTGGTCG
CGCGGCGAAG AACTGATGAC CGACCGTTTC CCCGAAATTG CGGCAAGTGG CGCACTTCTC
CCTGATGGCA TCGTCATCGA CGGCGAGGTT CTGCCGTGGA AACATGGCAC GGTGTTGCCT
TTCGCGCAGT TGCAGCGCCG GATCGGGCGC AAGAACCTGA CACGCGCCGT TCTCGACGAA
GCGCCGGCCA CGCTCCTGGC ATACGACCTG ATCGAACTCA ATGGCGTCGA TGTGCGTCAC
CAACCGCTGG AGTGGCGAAG AACAGAACTG GAGCGCCTGA TTGCGACCTG TGCGCCGGAT
AGTCAGGCGC TGCTGCTCTC GCCGGTGATT GTTGCTGCCG ATTGGGACGA CCTGGCGGCG
CAGTGGGCCA CCTCGCGTGC GCGCAATGTC GAAGGTCTGA TGCTCAAACG ACGCAATTCG
CCCTACCGCG TCGGTCGGGT GCGCGGCGAC TGGTGGAAGT GGAAAGTCGC CCCCTACACC
ATTGATGCAG TGCTGATCTA CGCGCAGCGC GGCAGCGGTA AGCGCGCCAG CCTCTACACC
GACTACACCT TCGCCGTGTG GGACGGCGAC CGGTTGACGC CGTTCGCCAA AGCGTATTCG
GGACTGACCG ACGACGAGAT CCGCGAAGTG GACGCCTTCG TAAGACGAAA TACCGTGGAA
AAGTTTGGAC CGGTGCGCAC CGTGACGCCA GCACTGGTCT TTGAGCTGGC ATTCGAGGGC
GTCCAGCGCT CGAACCGCCA TAAATCGGGG ATTGCCGTGC GTTTCCCGCG CATTCTGCGC
TGGCGGCGCG ACAAGCGCCC GGCTGACGCC GATACGTTGG AACGGGTGCG CGCCCTGCTG
CCAGAGGAAT CATGA
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| Protein sequence | MRHFAQLYTD LDETTRTGAK VEALMRYFER AEPADAAWAI FFLIGRRVRQ AVPLPTLRAW
AVEAAGIPDW LLGECYDAVG DFAETVALLL PEPGEWSVDV DRSVLSFEGP QPLHRWVEDV
LIPLRDREEA VQRAIVRAVW ATLGGTERFV WNKLITGAFR VGVSQQLVVR ALARASGTDP
AAIAHRLMGE WQPSAAFYRA LLARETADAD VSRPYPFCLA HPLDDPPETL GSIDEWQAEW
KWDGIRIRLI RRAGQTFLWS RGEELMTDRF PEIAASGALL PDGIVIDGEV LPWKHGTVLP
FAQLQRRIGR KNLTRAVLDE APATLLAYDL IELNGVDVRH QPLEWRRTEL ERLIATCAPD
SQALLLSPVI VAADWDDLAA QWATSRARNV EGLMLKRRNS PYRVGRVRGD WWKWKVAPYT
IDAVLIYAQR GSGKRASLYT DYTFAVWDGD RLTPFAKAYS GLTDDEIREV DAFVRRNTVE
KFGPVRTVTP ALVFELAFEG VQRSNRHKSG IAVRFPRILR WRRDKRPADA DTLERVRALL
PEES
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