Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3419 |
Symbol | |
ID | 5540918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4454095 |
End bp | 4456794 |
Gene Length | 2700 bp |
Protein Length | 899 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640895537 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_001433487 |
Protein GI | 156743358 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5002] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGCGGCG TTGTATCGGT TTTCCGCTCA CAAATCCGAT ACAAAATCAT CTTTCCTTAC CTCGCGCTGA CCCTCGTTGT GATGATGACG GGTGCGGCGA TTGCGGTCGG TCTGGTGGCG GCTTCGTGGG AAGAACGCCT CCAGAATCAG CTGGCGCAGG TGGCGCGCAA CTCGACGGAT GCGCTTGTGC GGCGTGAGCG CAATCATTTG GAATTTCTGC GTCAGGTGGT GTTTGCGCCT GCCAATAACG ATATTCCGGC GGTGGCGGAT GCCTTTGCCG GCGGAGACGC CGATCAGGTG ATGCGCGCGC TCGATCCGTA CTATCGGTTC GGCGTGGGCA GCGTCAATCT CGATTTTGAT CGCATGATCG CGTTTGACCG CGATGGTAAG ACATTGGTGG ATTGGCTGCG CGTTTCGGAG AATCCTGCCG ATCCCCCGGT GCGGATTACA ACGACCGATC TCTCGGGCCT GGATTTTGTC CGCTTGATCA TCTCCGGCGG GACGATCGAT GGAAACGACA AGTTCTCGAA CCTGATCTAT TTTGCGCCGG ATGTGCAACC ATATTTTTAT ACGGTGGCGC CGGTGCGCAG AGAGAATCAA GTGGTCGGCG GCGTGCTGAT CGCGGTTAAG TGTGATCGGT TGCTCCAGTC GCTTGAGCGC AGCAGTCAGG CGGCAGTGAC CACATTTTAC GATCTGTCGG GGCGGGCTAT TAGCACGACG CTGCTGCCGC GCGCGGAGTT GAGCGCGCTC GACATGCCGC CGCAGGTGTT GCAGGCGCTG CTCAGCGGTC AGGCGCAGTC GATTTTTACG GTCGAACTGC GCCAGCGCGG GTATCAACTG GCGTATAGTC CGCTGGTCAT TGCCAATGCA CAGGTGGGGT ATTTCTCGGT CGGTCTGTCA CGCGATTTTC AGGTGCAGCA GTTATCGTTG AGCCGGAATG TGGTCGTTGC CATTGCCATG GTGCTGGCAG CCGGATCGGT GATTCTGGGG TACCAGATTG CTCGACGAAT CACACGTCCG CTGTCGGACC TGGTAGCAAC GGCGGAGGCA GTGACCGGCG GCGATCTCGA GGCGCGCTCG ACGGTGATGT CGCCCGATGA GTTCGGTCGT CTGGCGCTGG CGTTCAATCA GATGACTGAG CACCTGGCGC GGCTGTACCG CACCAGCCGT GATCTCAATC AGGCGATTGA AGTGACGCCG GTGTTGAAGG TGACTGAACG CTCAGTGCGA TCCTTGCTGC CCGATATTGA TGTCCTGGCG TTGATCGCAG AGGAAGGAGC GCTACGGTAT CATATTGATG AGGAATTGCC GGGAATTGTT CGCAGCCTGC GGCATATTCG GGTGCCGTTG AGCGACCCGC TGGTGCAAGA ACTTGCTGCA ATACAACGAG TTGTGCAGGT GTCTCCTGAT GAAGAGCCGC GTCTGGCGTC GTTTGGTCTG ACGCAAGTCG CCGGGTATCA GAGCTTGATC CTGTCACCAC TGGTGGTGCA GGGAGAACCG GCGGGCCTGT TGATCCTGGC ACATCGCAAC CCCCATGCGT TCGACAGTAG TATATTGCCG TCGCTGATCG CAATTGCTAA TATGACCACC AGCGTGCTCT ACAATGCGGT GCTCTTTGAT CGGGTCCAGA GCGAAGCGCT GCGGCGGCGC GCGATTCTTG AGTCGATTGC CGATGGGGTG ATTGTGCTGG ATCGCCAACG GTATATCGTG ATCGTCAATC GTGCTGCTGA GCAGATGCTG AATATGCACG ACTGGCAGTT CGTTCGACGT TCCTTCAGTG AAATTCCACT CGTGCGTGTC AATGTCCGGC ATGAAGTGTT CAGCGAAAAT GGTACAGGAC ATCGCGAGCA TTTCCGTTTT GGCGATCGCG TATTGAGCCT GAGCAGCGCG CCGGTGATCA CGGGAGAAGG TTATCAAATT GGTGAAGTGG TTGTTTTGCA TGATATTTCG GCGGAAGCGG CAGTTGATCG CGCGAAAACG GATTTCATTG CCACCGTTTC GCATGAATTG CGCTCACCGT TGACCGTGAT CTACGGCTAT GTCGATCTGT TGCTTCGCGG ACTGGTTGGG GAATTGAGTG GCGATCAGTA TGATTTGCTC GAAGCAGTGC GGAATCGGGT TGAATTGATG AACAATATTG TCAAAAATGT TATTCTGGTC GCCAGCATTG AAGCCAATAC GCTTCAGACC GATCTGGCCC CTCAGGATGT GCGGCGTCTC ATCGATGAGA CGATTGCGCC GATGCGCAAG GCGTTCGAGC GTAAGGGTCT GACATTGACG GTGAATACGC CAGACGATCT GCCGCCGGTA CGCGCAGACC GTGAACAACT GATGATTATC CTTGGGCAGG TGATCGATAA TGCCCGCCGC TATACGCCGC AAGGCGAAGT GGCGATCACG GCGCATCGGC GCGATGATGG GATGGTGCAG ATCGATGTTG CTGACACGGG TCCCGGCATT CCTGCCGATC AGATGCCACG CCTGTTTACC CGTTTCTTCC GTGTGGAAGG CAATAATTCG CCTGAGCGCG GCAGCGGTCT TGGTCTGGTG ATTACACGAC AACTGGTTGA GCGCCACGGT GGCAAAGTGT GGGCGCAAAG CGAAGTTGGG CGCGGCAGCA CATTTAGCAT AGCACTCCCT ATCGCCCATG AGTACTCAGA CGCCATCTCC AGCCCACGCG CAACGCAGGC GACAGCCTGA
|
Protein sequence | MRGVVSVFRS QIRYKIIFPY LALTLVVMMT GAAIAVGLVA ASWEERLQNQ LAQVARNSTD ALVRRERNHL EFLRQVVFAP ANNDIPAVAD AFAGGDADQV MRALDPYYRF GVGSVNLDFD RMIAFDRDGK TLVDWLRVSE NPADPPVRIT TTDLSGLDFV RLIISGGTID GNDKFSNLIY FAPDVQPYFY TVAPVRRENQ VVGGVLIAVK CDRLLQSLER SSQAAVTTFY DLSGRAISTT LLPRAELSAL DMPPQVLQAL LSGQAQSIFT VELRQRGYQL AYSPLVIANA QVGYFSVGLS RDFQVQQLSL SRNVVVAIAM VLAAGSVILG YQIARRITRP LSDLVATAEA VTGGDLEARS TVMSPDEFGR LALAFNQMTE HLARLYRTSR DLNQAIEVTP VLKVTERSVR SLLPDIDVLA LIAEEGALRY HIDEELPGIV RSLRHIRVPL SDPLVQELAA IQRVVQVSPD EEPRLASFGL TQVAGYQSLI LSPLVVQGEP AGLLILAHRN PHAFDSSILP SLIAIANMTT SVLYNAVLFD RVQSEALRRR AILESIADGV IVLDRQRYIV IVNRAAEQML NMHDWQFVRR SFSEIPLVRV NVRHEVFSEN GTGHREHFRF GDRVLSLSSA PVITGEGYQI GEVVVLHDIS AEAAVDRAKT DFIATVSHEL RSPLTVIYGY VDLLLRGLVG ELSGDQYDLL EAVRNRVELM NNIVKNVILV ASIEANTLQT DLAPQDVRRL IDETIAPMRK AFERKGLTLT VNTPDDLPPV RADREQLMII LGQVIDNARR YTPQGEVAIT AHRRDDGMVQ IDVADTGPGI PADQMPRLFT RFFRVEGNNS PERGSGLGLV ITRQLVERHG GKVWAQSEVG RGSTFSIALP IAHEYSDAIS SPRATQATA
|
| |