Gene Rcas_3357 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3357 
Symbol 
ID5540856 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4383722 
End bp4387060 
Gene Length3339 bp 
Protein Length1112 aa 
Translation table11 
GC content61% 
IMG OID640895475 
Productcarbamoyl-phosphate synthase, large subunit 
Protein accessionYP_001433425 
Protein GI156743296 
COG category[E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism 
COG ID[COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) 
TIGRFAM ID[TIGR01369] carbamoyl-phosphate synthase, large subunit
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACGAC GAACTGATAT TCAGACGATT TTGATCATCG GCTCTGGCCC GATAGTTATC 
GGTCAGGCAT GCGAATTCGA CTATTCTGGC GTTCAGGCGT GCAAGGTGCT GCGCCGCGAG
GGGTTTCGCG TCGTGCTCGT CAATTCCAAT CCGGCGACAA TCATGACCGA CCCGCAGATG
GCAGACGCCA CCTATATTGA ACCGTTGACC CCGGAGATCG TCGAGAAAAT TATCGAGCGC
GAACGACCCG ACGCGCTGCT CCCGACCGTC GGCGGGCAGA CGGGTCTCAA CCTGGCGATG
AAACTGGCAG AGCGCGGCGT GCTCGATCGG TACGGCGTGC AGTTGATTGG CGCTTCGCCG
AAAGCCATTG CGCTTGCCGA GGATCGCGAG TTGTTCAAGC GCGCGATGAT TGACGCCGGG
CTGCGCGTGC CGCTCGGCGA AACAGTTTCG ACCGTCGATC AGGCGCTGGA GGCGGCGGCG
CGGATCGGCT ACCCGGTGCT GGTGCGTCCC TCCTTTACCC TCGGTGGCAG TGGCGGTGGT
GTGGCGTATA GTGAGGCGCA ATTGCGCGAG ATTGCGGATC GCGGTCTACG CGCCTCGCCG
GTGACGCAGG TGCTCATCGA ACAGTCGGTG CTCGGATGGA AGGAGTACGA ACTTGAGGTG
ATGCGCGATC GGATGGACAA CTTCGTTGTT GTCTGTTCTA TCGAGAACCT CGACCCGATG
GGCGTCCATA CCGGCGACTC GATCACCATT GCTCCGACGA TGACGCTGAC CGACCGCGAG
TATCAGCGGC TGCGCGAGAT GGCGAAGATC GTCATTCGCA CGGTCGGCGT CGAAACCGGT
GGCTCGAACA TCCAGTTTGC CGTTGATCCA CGCGATGGCA CGCCGCTCGT GATCGAGATG
AACCCGCGCG TCAGCCGCTC GTCGGCGCTG GCGTCCAAAG CCACCGGCTT CCCAATCGCC
AAGATCGCGG CGCTGCTCGC CGTCGGTTAT ACCCTCGACG AAATCCCGAA CGATATTACG
CGCGTGACGC CTGCGTCGTT CGAGCCAAGC CTGGACTATG TGGTGGTCAA AATCCCACGC
TGGGCGTTCG AGAAGTTCCC CGGCGTCGAT CCGACTCTCG GACCACAGAT GAAGAGCGTG
GGCGAGGTTA TGGCGATTGG TGCGACGTTC AGCGAGGCGT TGCAGAAGGC GATCCGCGGG
CTGGAGATCG GCGCTGTCGG GTTCGGTGTG TTCGCCGGGA AACGCGTGAA CGCTGAAATG
ACGCCTGAGC CATCGGACGA TGACCTGCGC ACTCCGACGG CACAGCGTAT CTTTCACGTT
GCCAATGCGC TGCGCGCTGG ATGGGACATC GAGCGGATCG CGGCGCTGAC CGGCTATGAT
CCCTGGTTTG TGGCGCAGAT GCGCGCGATC ATCGACATCG AAACGGCGCT TGCGCGTTAT
TCGCTTGCAA CGCTCCCTGT CGATCTGCTA CGTGAGGCGA AGGAACATGG CTTCTCCGAC
GCGCAGATCG CACTCATTCT GCAACCGGAC CTTCGTAATG GTACGTTTCA CGTTCCGACT
GAGATGGATG TGCGCGCGCG TCGTAAGGCG CTCGGCATTC TGCCGGTCTA TCATCGGATC
GACACCTGCG CCGCTGAGTT TGAAGCCTAC ACCCCCTACC TCTATAGCAC CTATGCGACA
TCCGATGAGT CGGCGGTGAC CGACCGCCCG AAGGTGGTCA TTCTCGGCGG TGGACCCAAT
CGCATTGGTC AGGGGATCGA GTTCGACTAC TGCTGCGTCC ACGCCAGTTT TGCGCTGCGC
GACCTCGGCT ACGAGACGAT CATGATCAAC TGCAACCCGG AAACGGTCTC AACCGACTAT
GATACCAGTG ATCGCCTCTA CTTCGAGCCG CTGACTCTCG AAGATGTGCT TAATGTCTGG
GAGAACGAGT CGGGCATGCG GGACGGCAGG GCAGGAACGC CTGTGCCAAT GCTCGTGCAG
TTTGGCGGTC AGACGCCGCT CAATCTGGCG AAAGGGCTGG CAGCGGCTGG TGTGCCGATC
TGGGGCACCT CGCAAGACTC GATTGATCTG GCAGAGGATC GCGGGCGCTT TAGCGAACTG
CTCCGGCAGT TGGACATGAT GCAACCGGAG AGCGGCATGG CTGCCGACCT TCAGACTGCC
CGGCGAGTGG CGCAGCGGAT TGGCTACCCG GTGCTGGTGC GTCCCAGTTA TGTGCTCGGC
GGGCGGGCAA TGGCAATTGC CTACGATGAT GAAGGACTGG CGCAGTATAT CCACGAAGCG
ACACAGATCA GCGCCGGTCA ACCGGTGTTG ATCGACCGCT ACCTGGAGGA TGCTTTCGAA
CTCGATGTCG ATGCTGTCGG TGATGGCGAG CGCGTGGTGA TCGGCGGCAT TATGGAGCAT
ATTGAGGAGG CTGGCGTCCA CTCTGGCGAC TCGGCAATGG TCATGCCGCC GTTCAAGGTC
AGCGCCTATC ACCTTTCGAT CATCCGCGAC GAAACGATCC GCATTGGTGA GGCGCTGCGC
GTCAAGGGGT TGATGAATAT TCAATTCGCC ATCAAGGACG ACGAGGTCTA TGTGCTCGAA
GTCAATCCAC GCGCCTCGCG CACCGTGCCG TTCGTCGCCA AAGCCACCGG CGTGCCGCTG
GCGCGTCTTG CTGCGCAGGC GTGTGCTGGC AAGACGCTGA TCGAACTCGG ATTGACGCGC
GAGCCGCCGC TCAATGGCTT CTTCGTCAAG GAAGCCGTTT TGCCATTCGA TAAGTTCCCC
GGCGCTGCCG TCTTCCTCAG CCCTGAGATG CGCTCCACCG GTGAGGTAAT GGGGCATGCT
TCGACCTTCG GGCATGCCTT CGCCAAAGCC GAAATGGGCG CCAACCAGCG CATTCCTGTC
AGCGGCGGCG CGCTGCTGAC GGTTAACGAC TACGATAAGG GTGCTATCGG GCGGATTGCC
CGCGATCTGG TGAAATTCGG TTTTACTATC TACGCTACAC GCGGCACAGC AGCCTGGCTC
CACCAGCTTG GTCTGCCCGC CATCGTTGTC AACAAGGTTT CCGAAGGCTC ACCCCATACC
GTCGACCTGA TTGCGTCGGG CAAGGTGGGA TTGGTGATCA GTACCCCCCT CGGTCCACGC
GCCTATGCCG ATGGTCAGGC GCTACGCTCG GCTGCCATTC GCTACGGGGT GATGCTGGTG
ACGACCCTCA CCGGCGCAGC GGCGACGGTG AGCGCCATCA AGGCGTTGCG TCAGAAGGAA
TTGCGCGTCC GTTCTTTGCA GGAACACTAT CGTCTGACAA TGACGGCAGA CAGCACGATA
GTGAGCACAT CTCTGAAGAT CAATAAGGAA CTATCATGA
 
Protein sequence
MPRRTDIQTI LIIGSGPIVI GQACEFDYSG VQACKVLRRE GFRVVLVNSN PATIMTDPQM 
ADATYIEPLT PEIVEKIIER ERPDALLPTV GGQTGLNLAM KLAERGVLDR YGVQLIGASP
KAIALAEDRE LFKRAMIDAG LRVPLGETVS TVDQALEAAA RIGYPVLVRP SFTLGGSGGG
VAYSEAQLRE IADRGLRASP VTQVLIEQSV LGWKEYELEV MRDRMDNFVV VCSIENLDPM
GVHTGDSITI APTMTLTDRE YQRLREMAKI VIRTVGVETG GSNIQFAVDP RDGTPLVIEM
NPRVSRSSAL ASKATGFPIA KIAALLAVGY TLDEIPNDIT RVTPASFEPS LDYVVVKIPR
WAFEKFPGVD PTLGPQMKSV GEVMAIGATF SEALQKAIRG LEIGAVGFGV FAGKRVNAEM
TPEPSDDDLR TPTAQRIFHV ANALRAGWDI ERIAALTGYD PWFVAQMRAI IDIETALARY
SLATLPVDLL REAKEHGFSD AQIALILQPD LRNGTFHVPT EMDVRARRKA LGILPVYHRI
DTCAAEFEAY TPYLYSTYAT SDESAVTDRP KVVILGGGPN RIGQGIEFDY CCVHASFALR
DLGYETIMIN CNPETVSTDY DTSDRLYFEP LTLEDVLNVW ENESGMRDGR AGTPVPMLVQ
FGGQTPLNLA KGLAAAGVPI WGTSQDSIDL AEDRGRFSEL LRQLDMMQPE SGMAADLQTA
RRVAQRIGYP VLVRPSYVLG GRAMAIAYDD EGLAQYIHEA TQISAGQPVL IDRYLEDAFE
LDVDAVGDGE RVVIGGIMEH IEEAGVHSGD SAMVMPPFKV SAYHLSIIRD ETIRIGEALR
VKGLMNIQFA IKDDEVYVLE VNPRASRTVP FVAKATGVPL ARLAAQACAG KTLIELGLTR
EPPLNGFFVK EAVLPFDKFP GAAVFLSPEM RSTGEVMGHA STFGHAFAKA EMGANQRIPV
SGGALLTVND YDKGAIGRIA RDLVKFGFTI YATRGTAAWL HQLGLPAIVV NKVSEGSPHT
VDLIASGKVG LVISTPLGPR AYADGQALRS AAIRYGVMLV TTLTGAAATV SAIKALRQKE
LRVRSLQEHY RLTMTADSTI VSTSLKINKE LS