Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3347 |
Symbol | |
ID | 5540846 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 4367337 |
End bp | 4369226 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640895465 |
Product | peptidoglycan binding domain-containing protein |
Protein accession | YP_001433415 |
Protein GI | 156743286 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3409] Putative peptidoglycan-binding domain-containing protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTATGA AGAAGCCGCT ATCTGCCCGG TCTTCTGAAC CGGCAGATGG GATCGCAACC GTCTGGATCA ACCAGTTGCG GCAAGGGCCA GCTCCACCCG CAATTGCTGA GGAGGCGCCG GTCACGCCAG AGCAGCAGCG AGACGGTGAT CGGGCATTCG GGCATCACTT CGGCGACTTT CGCCTCCACT CCGGCGCAGA GACAGGACTG ACGCCTGCGG CCCCGCCAGT CGCACCGTTG ACTGCGTTTC ACCGTATCAC CATTCAGACC CAACGCTCTC CCCAATCATC GCGTCCTACC CTTCGCCAGG GATCGTCCCA TGCGGAGGAC ATCACATTCC TTCAGGAACG ATTGAACAGT GATGGCGCCA CGCCAGCGCT CGAGGTCGAT GGCATCTTCG GTCCGCTCAC CGATGCCGCG ACGCGCGAGT TTCAGCGTCG CCACGGACTG ATCGTCGATG GCATCGTTGG CCCACAGACA TGGGGCGCTC TCAATGCCCT CGAGCGGGCA GGCATTGCTG GACCGGAAGA TGTGATGAGT GGAACACGTC CGGTGACCGC TGAACAACAC CTCGAGGTCG AGCAGGCGCT GCATCCGAAT GCGCAAACCT CCGGCGGCTC AGTCACCACG CCGCCGATGA CTGGCGCAGG GGTTGGCGGC GAGTTTGAAC AGCACATGAT CGCGGCGCTC GATACGCTGA TCAACGATCG AGTGAACCCC GAAAACGAAA TGCCCGCTTC GCCAGACCTG ATGGACCCGA TTCGTGAGAT CGCCGATGCA GCGCAGCAGA CGGTGGAAGA TTTCTACGCT CGCTATATTG TGATGGCCAG CCGCACTCCA ACCGGTTCGT ACCATCCCGG CAGCTTTCGC ATCCCTCTCG GCGATGCGTC CACGCGCCCC GTCTCGCGGG AATATGCTGC CGGCTGGGTC GACTATTTTA TGTCCGAGCC ATCCTATGAG CCAAGCCAGG TGCTGACCGA TCACAACGTC GATACATCGC GCGACCGCCC GGATCGCGCC GAGTATACCC GTGTGCGCGA TCTCTATGTC AGTAATGATA CACGGTTCCA TAACGTGCGC AATGTGATTC GCGGCTGTCC CGCCGAAGCC GGAACGGGAA CCGTGTTTGT TCAGCCGCGT GAGTATCAGG GGCTGGTTGG CAGGTGGGCG CTCTTCAAAA CCATGATGCA CGAGTTTCTG CATCTGGTGA CCCATCCGAA TTATAGTCGC GCTGCGGCAG CGGTTGGCGG CAGTGCGCGT CAGGCGCTGA TCGAAGGATT TACCGACCAC TTTACGCTCC AGGTATGGCA TCACGTGCGC GACTCACTGG AGGCGAATCG CGCACTCCGC CAGCGTGTTG AGGGAAATCT GTTCCAACCC GATCTGGATC CCACCATCCT TGAAGATCCA TCAACATATT CTCAGGAAGC GCCGGAACGC ATCGTTGCGG CTGTTGGCGA GGAAAATGCC CGGGTGGCTT ATTTTATGGG ACATGCCGAT CTGCTCGGGC TGGGTGCAGG CACACTGAGC GAGGCGCCGT TGACGGGCAT TGCAACCTGG GAACCAACCG ATAGCAACAC CGCAGAAGAG TACACGGTCC GCGCCGGCGG CGAGACAGTC GCCCAAATTC GTGAGCGCAC CAATGCAGCG ACCATCACGG AACTCGATGG CACTGAGGTG GTCGATGACA CGCAGCGTTT TGCCGCCGGT CATCGCCTGC ACATTCCAGG CATTCGCTGG TATCGCGCGA TCGCCGAAGA TACGCGGGCG CAGGTCGCCG GGCAGCATGG CATAACGCTT GATCAACTCG AACGGGCAAA CGGCTGGACG CACCGCCGCG GCAATACGCC GATCCCGGCG GGGACGCGAG TGCTGATTCC GCGACACTAG
|
Protein sequence | MRMKKPLSAR SSEPADGIAT VWINQLRQGP APPAIAEEAP VTPEQQRDGD RAFGHHFGDF RLHSGAETGL TPAAPPVAPL TAFHRITIQT QRSPQSSRPT LRQGSSHAED ITFLQERLNS DGATPALEVD GIFGPLTDAA TREFQRRHGL IVDGIVGPQT WGALNALERA GIAGPEDVMS GTRPVTAEQH LEVEQALHPN AQTSGGSVTT PPMTGAGVGG EFEQHMIAAL DTLINDRVNP ENEMPASPDL MDPIREIADA AQQTVEDFYA RYIVMASRTP TGSYHPGSFR IPLGDASTRP VSREYAAGWV DYFMSEPSYE PSQVLTDHNV DTSRDRPDRA EYTRVRDLYV SNDTRFHNVR NVIRGCPAEA GTGTVFVQPR EYQGLVGRWA LFKTMMHEFL HLVTHPNYSR AAAAVGGSAR QALIEGFTDH FTLQVWHHVR DSLEANRALR QRVEGNLFQP DLDPTILEDP STYSQEAPER IVAAVGEENA RVAYFMGHAD LLGLGAGTLS EAPLTGIATW EPTDSNTAEE YTVRAGGETV AQIRERTNAA TITELDGTEV VDDTQRFAAG HRLHIPGIRW YRAIAEDTRA QVAGQHGITL DQLERANGWT HRRGNTPIPA GTRVLIPRH
|
| |