| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3262 |
|---|
| Symbol | |
|---|
| ID | 5540760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 4236790 |
|---|
| End bp | 4237458 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640895381 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001433332 |
|---|
| Protein GI | 156743203 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.764026 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACCA TGCCTATCCG TATTCTGCTG GCCGATGATC ATCGCATGTT CCGCCAGGGA
CTGCGCGAAC TGCTTGAGCG CAAAGGCGGG TTCATCATCG TTGGCGAGGC GTCAACCGGG
CGCGAGGTGC TGGCGCAGGC GGCAGCGCTG CGCCCGGACA TCGTGCTGCT CGATATTCAG
ATGCCGGAGA TCGATGGCGT CGCTGTCGCG CGGCAACTGG CGCAGACGCA CCCGGATGTC
AAGGTCATTA TGCTGACAAT GTATCGCCAG GATCAGCATC TGTTCGAGGC GATCAAAGCC
GGGGCGCGCG CCTATCTGCT GAAGGACGCC GACGCCGACG AATTGATTGA TGTGATCGAA
CGGGTGCATC GCGGCGAAGC GGCGCTTGAT CCGACCGTCA CGCTGCGGGT ATTCGATGAG
TTTCGCCGGT TGAGCATCGA TCAGGACGCC GAACAACTGA CAGAGCGTGA GCGCGATATT
CTCACACTCC TGGCTGAAGG GCATGACAAT CGCACGATTG CGCAACGCCT GTTTCTGTCG
GAGAAGACCG TTGGCAACCG CCTGAGCGAG ATTTTCCAGA AACTCGGCGT CAGCAACCGT
ACCCAGGCTG CGCTGGTGGC GGTACAGCGT GGATTGATTG CACCACCCAA ACCGGACTCG
ACCGAATAG
|
|---|
| Protein sequence | MSTMPIRILL ADDHRMFRQG LRELLERKGG FIIVGEASTG REVLAQAAAL RPDIVLLDIQ
MPEIDGVAVA RQLAQTHPDV KVIMLTMYRQ DQHLFEAIKA GARAYLLKDA DADELIDVIE
RVHRGEAALD PTVTLRVFDE FRRLSIDQDA EQLTERERDI LTLLAEGHDN RTIAQRLFLS
EKTVGNRLSE IFQKLGVSNR TQAALVAVQR GLIAPPKPDS TE
|
|---|
| |