| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3162 |
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| Symbol | |
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| ID | 5540660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4104282 |
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| End bp | 4105046 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640895283 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001433234 |
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| Protein GI | 156743105 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.153501 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACATTG CGGGAAGCAG CGCCCTGATC ACCGGCGGAG CGTCGGGGTT GGGCGCAGGT
GTGGCGCGCC ATCTGGCAGC GCTTGGCGCG ACGGTCACGA TCGTGGATGT TAACCGCGAG
GCAGGCATGG CATTGGCAGC GGAACTTGAC GAACAGGTGC GCTTTATTGC TGCCGATGTC
GCCGACGCCG AACAGATGCG GGCGGCGGTC GAGGCAACCG CAAGCGATGG CAACCTGCGC
GCGTTGGTCT GTTGCGCAGG CATCGCCACG GCGGAACGCA CGCTGGGCAA GGAAGGACCG
TTGCCACTCG AACGGTTTAC GCGCGTGATT GCGGTCAATC TGATTGGCAC ATTCAATGCC
ATCCGGTTGG CTGCGACGGT TATGGCAGGC AACACGCCCA ACGACGACGG CGAGCGCGGC
GTGATTGTCT GCACTGCTTC GATTGCCGCG TTCGAGGGGC AGATCGGGCA GGCGGCATAT
AGCGCCTCGA AAGCCGGTGT GGTCGGTATG ACGCTGCCGC TGGCGCGCGA ACTGGCACGA
CACGGAATTC GGGTCGTCAG CATCGCGCCC GGAACCTTTG ATACACCGAT GCTGGCAGGG
CTGCCGGAGG CGGCGATCAT GGCGCTGGCG CAGCAGGTTC CGTTTCCATC GCGTTTGGGC
AGACCGTCCG AGTTTGCCAC GCTGGTGCAG CACATTATCG AGAACCCGAT GCTCAATGGC
ACAACAATCC GCCTCGACGG CGCGCTGCGC ATGGGTCCGC GATAA
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| Protein sequence | MHIAGSSALI TGGASGLGAG VARHLAALGA TVTIVDVNRE AGMALAAELD EQVRFIAADV
ADAEQMRAAV EATASDGNLR ALVCCAGIAT AERTLGKEGP LPLERFTRVI AVNLIGTFNA
IRLAATVMAG NTPNDDGERG VIVCTASIAA FEGQIGQAAY SASKAGVVGM TLPLARELAR
HGIRVVSIAP GTFDTPMLAG LPEAAIMALA QQVPFPSRLG RPSEFATLVQ HIIENPMLNG
TTIRLDGALR MGPR
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