| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3149 |
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| Symbol | |
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| ID | 5540647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4081277 |
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| End bp | 4082968 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895270 |
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| Product | ABC transporter related |
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| Protein accession | YP_001433221 |
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| Protein GI | 156743092 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02673] cell division ATP-binding protein FtsE
[TIGR02982] ABC exporter ATP-binding subunit, DevA family
[TIGR03608] putative bacteriocin export ABC transporter, lactococcin 972 group |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACGA CCGATCACAT TATTCACGCC AGTGGTCTGG TGAAAATCTA CAAGGTCGCC
GAACTCGAGG TGGTGGCGCT CCAGGGATTG GACCTCGAAG TGGCGCGGGG CGAGTTTCTG
GCGCTGGTTG GTCCCTCCGG GTCGGGCAAA TCGACGCTTC TCAGCGCCAT TGGCGGTCTG
GATCGTCCTT CTGCCGGACG GTTGATCGTC GATGGGCTTG ATCTGACAGC ACTGACACCT
GCCCAGTTGA GCGCCTATCG TCGCGAGCGA GTCGGCTTCA TCTGGCAGCA GACGACCCGC
AACCTGCTGC CATACCTTAC TGCGCGCGAG AATATCGAAC TGCTGATGAC CTTTGCGGGT
CGCAGCAGGC GCGAGCGGCG CGCCTGGGCG GATGAGCTGC TGGAAGCGGT CGGCATCGTC
GAGAAAGCCT CGACCCCAAT CACACAATTA TCCGGCGGTC AGCAGCAGCG AGTTGCCATT
GCGTGCGCAC TGGCGAACCG ACCAAAAATC CTGCTCGGCG ACGAACCAAC CGGCGAAGTA
GACTGGGAGA CAGCGCAGCG GGTGCTGGCG CTGCTCCGCG ACCTGCGAAC ACGCTACGGA
CTCACGATTG TCCTGGTCAC GCACGATCCG CGGGTGGCAG AACAGGCAGA CCGGGTGATC
GTCATCCGCG ACGGGCGAAC GAGCACCGAA ACGCGCCGCG ATGATGGAAG CGGCAATGGG
GTGTCGGCGA TGACCGGGCA TAGCGCGCGC GCGCGCGCCG CCGAAGAACT TGTCGTCGTT
GATCGCACCG GGCGTCTCCA GATTCCTGGC GATCAACGGG CGCTCGCAGG AATTGGGCGG
CGCGCGCGCG TCGAACTTGT CGATGGCGGC GTCCTTATTC GTCCGGTCGA AGACGACCGG
ATCGCCGTTC CAACGGAGGA AACCACCGGC GATCAGCCTC ACCATTACCT GTATGATGGT
GACGTCGCCT CCGAGGTCGC CGCATCAATG CCATCCGAGC CGCTGATCGA GGTCCGAGGC
ATCACCCGCA CCTTTGGCGC TGGCGCGCGC GCCGTCTCCG CATTGCGCGG CGTCGATCTC
ACTATTGAAC GAGGCACATT TGTTGCCCTC ATGGGTCCGA GCGGCAGCGG TAAGACGACG
CTGCTGAATA TCATCGGCGG GCTGGATCGC CCGACGAGCG GCAGTGTTGT CATTGAAGGT
CAGCGTGTCG ATCAGATGCG TTCCGATGAC CTTGCCAGGC TGCGGCGTCG GATCGGGTTC
GTGTTTCAGA GTTTTGCGCT GCTGCCCACA TCATCGGCAT TTGAAAACGT CGAACTGGCG
CTGCGTCTGT CAGGGCAGGC GCCTCGCCGA CGATGGGATG CGCGCGTGCG CCGGGTGCTT
GCTGCGGTTG GTCTGACCGA CTGGATCGAT CATCGCCCTT ATGAGTTGAG CGGTGGTCAG
CAGCAGCGTG TTGCTCTGGC GCGGGCGTTG GTCACCTACC CGCGCATTAT TCTGGCGGAC
GAACCAACCG GCGACCTCGA CAGCCGCACC GGGAGACGGG TGCTGACGAT GCTGCGCACC
CTGTGCGACC AGGAGGGCGT AACGCTGGTT ATGGCAACGC ACGATCCGGC AGTGATGGAA
TTCGCTACCA CGGTGTATCA TATGCGCGAT GGCGTCGTCG TCGGATGCGA GCAGGGAGTT
ACCGCTCGTT AA
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| Protein sequence | MNTTDHIIHA SGLVKIYKVA ELEVVALQGL DLEVARGEFL ALVGPSGSGK STLLSAIGGL
DRPSAGRLIV DGLDLTALTP AQLSAYRRER VGFIWQQTTR NLLPYLTARE NIELLMTFAG
RSRRERRAWA DELLEAVGIV EKASTPITQL SGGQQQRVAI ACALANRPKI LLGDEPTGEV
DWETAQRVLA LLRDLRTRYG LTIVLVTHDP RVAEQADRVI VIRDGRTSTE TRRDDGSGNG
VSAMTGHSAR ARAAEELVVV DRTGRLQIPG DQRALAGIGR RARVELVDGG VLIRPVEDDR
IAVPTEETTG DQPHHYLYDG DVASEVAASM PSEPLIEVRG ITRTFGAGAR AVSALRGVDL
TIERGTFVAL MGPSGSGKTT LLNIIGGLDR PTSGSVVIEG QRVDQMRSDD LARLRRRIGF
VFQSFALLPT SSAFENVELA LRLSGQAPRR RWDARVRRVL AAVGLTDWID HRPYELSGGQ
QQRVALARAL VTYPRIILAD EPTGDLDSRT GRRVLTMLRT LCDQEGVTLV MATHDPAVME
FATTVYHMRD GVVVGCEQGV TAR
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