Gene Rcas_3146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3146 
Symbol 
ID5540644 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp4077347 
End bp4078123 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content55% 
IMG OID640895267 
ProductNi/Fe-hydrogenase, b-type cytochrome subunit 
Protein accessionYP_001433218 
Protein GI156743089 
COG category[C] Energy production and conversion 
COG ID[COG1969] Ni,Fe-hydrogenase I cytochrome b subunit 
TIGRFAM ID[TIGR02125] Ni/Fe-hydrogenase, b-type cytochrome subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0114554 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACGAC GAGTCTATGT CTGGGAAGTC CCGGTGCGCC TGACGCATTG GGTCAATGTG 
TTGAGCATTG TCATGCTCTG CTTCACCGGC TACTACATTG CCAACCCGTA CATTTTCGTG
AGCACGCGCG AACCGTGGGG CATCTATTTC ATGGGGTCGA TGCGGTTTCT CCACTTTGTG
TTCGCCTACA TCTTCGTGGC GAGCCTGATT CTGCGCACCT ACTGGGCATT TGTCGGCAAT
CAGTGGGCGC GCTGGCGTGG CCTGTTTCCC TTCCTGACGA AGGAAGGGCG CACAAATATG
TGGCATGCGA TCCAATACTA CTTCTTCCTG CGTCGTAATC CTCCAGAGGT TGCCGGGCAC
AATGCGCTGG CAGGCACATC GTACATGATC ATTGTTGTCC TGTACGGTTT GAGCGCTTTT
ACCGGTTTTA CGCTCTACGG TCAGTTGCAT CCTGCAAGCA TCTGGTACAC GCTCACCGAC
TGGGTGACGA ACCTTGTGTC GCTTCAAACG CTGCGGCTGG GACATCACAT CATTATGTAC
CTGATCCTGG CGTTTGTCGT TCACCATGTG TACGCCGCGT GGTTGATCGA CATGGAAGAG
GGGAACGGTT TGATGTCGAG CATCTTCAGT GGCTATAAGT TCCTTCCCAG GGAGCAGCAG
CCGGACTGGA TCGAGCAGGT GATCGCGCAA AATGGCAAAC AGAACGGCAA AGCGCCGCAG
GTAGCGGAGC CGACGACGCA GCAGGTGAAG GTTGCAGGCG GGAAAGTCGA AAGTTGA
 
Protein sequence
MRRRVYVWEV PVRLTHWVNV LSIVMLCFTG YYIANPYIFV STREPWGIYF MGSMRFLHFV 
FAYIFVASLI LRTYWAFVGN QWARWRGLFP FLTKEGRTNM WHAIQYYFFL RRNPPEVAGH
NALAGTSYMI IVVLYGLSAF TGFTLYGQLH PASIWYTLTD WVTNLVSLQT LRLGHHIIMY
LILAFVVHHV YAAWLIDMEE GNGLMSSIFS GYKFLPREQQ PDWIEQVIAQ NGKQNGKAPQ
VAEPTTQQVK VAGGKVES