| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3139 |
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| Symbol | |
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| ID | 5540637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 4069776 |
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| End bp | 4070480 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640895260 |
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| Product | SNARE associated Golgi protein |
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| Protein accession | YP_001433211 |
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| Protein GI | 156743082 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0398] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.653683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCCGT CACCTGATGC CATGCACGTG CGTCGGGTGC TGTTCCTCGC CGGCGCGCTC
GCCCTCACCC TTCTTCTCTT CCTGATCGGC TGGCGTGGCG CCGCTCAACA AGTGTTCAGC
GCCGCATCCC CCGAAGAGGC TGCCGCGGCG CTGCGCAGCT TTGGGCTATG GACGCCGCTG
GTCAGCGTAC TGCTGATGGT CGTGCAATCG GTGCTGGCGC CGCTGCCCGG CTCCTTCGTT
GCCGCTGCCA ACGGCGCGAT CTACGGCATC TGGTGGGGGA CCCTTCTCTC CTGGATTGGC
GGCATGGCGG GGGGTCTGGC GACCTATGGG CTTGGGCGTT TGTCTGGCAA TGTCCTGGAG
CAGCGCTGGA AGGATACACC CCTCTGGCAA CGATTGACCG GCGTTGGTGC GGCTCGTCGT
TTCTGGATCG TCCTGATTGC CAGAATGACG CCAATTGTGT CGCTCGATTT CATCGGATAT
CTGGCGGGTG TCTCACGCAT GCCGCTCCCG TCGTATACCC TTGCCAACGC CATTGGCATT
CTCCCCGGCA TGCTGGCGTA TACGCTGATC GGCAGTGAAC TGATCCAGGG GCGCGCCATA
TCCTGGCAGA TCGCCGTGGC GCTGCTCCTG ATCGTCGTGC TGTTCATCAT TGGTCGGCGC
CGGCTCCGAA CGTTGAACGT CGAACGCGCG AATGTCGAAC GTTGA
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| Protein sequence | MSPSPDAMHV RRVLFLAGAL ALTLLLFLIG WRGAAQQVFS AASPEEAAAA LRSFGLWTPL
VSVLLMVVQS VLAPLPGSFV AAANGAIYGI WWGTLLSWIG GMAGGLATYG LGRLSGNVLE
QRWKDTPLWQ RLTGVGAARR FWIVLIARMT PIVSLDFIGY LAGVSRMPLP SYTLANAIGI
LPGMLAYTLI GSELIQGRAI SWQIAVALLL IVVLFIIGRR RLRTLNVERA NVER
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