| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3135 |
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| Symbol | |
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| ID | 5540633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4061868 |
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| End bp | 4065431 |
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| Gene Length | 3564 bp |
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| Protein Length | 1187 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640895256 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001433207 |
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| Protein GI | 156743078 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG1609] Transcriptional regulators |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCAG ATGCATCTAT GTCTGATGGG ACGCTTCACG CAACACGTCC AACCATTGGC
CTGCTGACCG CAATCGTCAA TCAACCGTTC TGGTTGGGGG TTGTCGATGC TGCGCGCCGA
CACGGCGTGA ATCTGATCTG TTTTCTTAGC GGGACGCTCC CCGTCCGCAG TCAGGCGCTG
CTCAGGGTTC CGTATCTTCA AGTGTTGCCG GCGTTGTCCT TTTTCGCGCT GGCAAACAGC
GAACGTCTCG ATGGACTTAT CACCTGGGGC GGCAGCAGGT CCGGGTTTGG CATAAACCTC
GATGACGCCG AGATGGAGGA GTTCATTGCC CCTTTCCGGC GGTTGCCGAT GGTCAATTAC
GAAGGTTTGA TCCAGGGTGT GCCGTCGGTT GTGACCGATA CACGCCAGGG GATGCGCACC
CTGCTGGAGC ATTTGATCGA GCGCCATCAG CGATGCCGTA TCGCCTTCAT TCGTGGTCCG
CAGCGCCATA TGGAGAGCGA GGAACGCTTC GCGGCATATC AGGAGACGCT TCGCGCGTTT
GGCATACCTT TCGATTCCGC GCTGGTGTAT CACGATTTGC GATGGGGGAA GATCGTTGGG
ATCGAGGCGG CACGCGAACT GATCAGCAAG CGGCGCCTGC GCCCCGGCGC CGACTTTGAC
GCGCTGGTCG GCTCCGAAAT TGAATATGCT CTCGGTGCGC TGCACACGCT TCAGGAGTCT
GGTGTGCGCG TCCCGGATGA GGTGGCAGTC GTCGGGTTCA ATGATCATCT GGATGCGCAA
ACGTTGGATT TGCCGATAAC GGTCGTGGCC AAGCCATTTT ATGAGTCGGG TGTCGTCGCC
GTTGGTGCGC TCCTTGATCG GATTGCCGGG AAGAGCATCC CTGATCGAAT CCATGTCCCT
GCCCGCCTGA TTGTTCGTCG ATCATGCGGG TGTTGGTCGC CGGATCGCTC GGCGCCGGTT
CTGTCGGGCG ATCTGGTTGA AGCGCGCGGT GATCGCCTGG TCGCACAGAT TGGGCGTCTC
CGTGACACGA TAGACGCAGA CATTGACCGT TCCTGGATCA ATGTCCTGAT CGAAGGGTTG
TTGCCAGGAA TGCCGGATAG ACATGATCAG GAACGAGATC AATTCTGGAG CGCGTTTGAG
CGCGAATTGT CGCGCAGGCG CACCCGGCAG GAACTGGCGC AATGGCACGA TGTGATCTCG
GAATTATTCT ATTTGATCGT GTCAGCGCTC GATCATGCCG ATGATATGCC ACGCGCGAAT
CTTCTGTTTC TGCAACGGAT TCGCCTGGCG CTGGCGCAGG AGCGCGAGCG CTCCAGAATT
GAACTGCGCA CCAGAACGAT CGAGCAGTCT CACACGCTGC TCGAGATCAG TCAGTCGATG
CTCATCGCGC AGGACCTCAA GTATCTCCTT GAGGTCCTCG CGCAGCGGTT GCCCGAATTG
CCTGTCAGAG ATGGCTATCT TGTCCTGTAC GACGATTTTC CTCCAACGAC GAACCTGGAA
GCGCCGGTAT GGGGACGGGT GGTGCTGGCG CTGCACGAAG GGCGCAGGTT GCCATTGCCT
CCTGATGGGA TATCGTTTCC CAGCCGCCGG ATTGTTCCAG ATGCGTTGCT TTGCGAGCAC
CAACCATATG CGTTCATAGT CACTCCGCTC TTCTTTGGAT TGCGCGATTT TGGGTTCATT
GCCGTTCAGG TCGGACCGCG CGAGGGCGGA GTATATCATA TGCTGGCGCA GGAGATCAGT
AGCGCTTTGC AATCGGTCTT TCTCTGGCGC GACTATCGCC GGTCGGAGTA TGCGCGACGT
GAGAGTGAGG CGCGTCTGCA CACAATCGTT GAGCATATGC CGGTGGCGTT GTGGGCGAAG
GATCTCAATG GCAGGTACAT CATGCAGAAT TCGGTGATGC GAACGCTGAC CGGCGACAAT
TCCTGGAAGG ATGAGGACAG CGGCGGTGCG GCGCTGGCGG AATGGGCGCC GTATGAGGCA
TGGGCACGGG AAGGAAGAAC GGTATCCTTC GAGCATGCGC TTCTGGTTCA GGACCAGCCG
CGTCTGTTCA AGCACATCAT CGCGCCTGTC CAGGTGGACG GCACGGTGAC TGCAATTTTG
GGGTTGATGT TCGACATCAC CGAACAACGC ACGCTTGAAG ACTCCTTACG ATCTGCCAAA
GAGTCGGCAG AAGAAGCGCG CCGTGCCGCC GAAGCCGCCA ATCGCGCCAA AAGTGTCTTT
CTTTCCAATA TCAGCCACGA GTTGCGGACG CCGCTCAACA GTATTCTTGG GTATGCTCAG
ATTCTCGAAC ATGATCCCAC AACTTCCGAT TATGCCCGAA AAAGCCTGCG GGTCATTCAG
TCCAGTGGTG AGCAGTTGCT GAACCTGATC GATGATTTGC TCGATCTGGC AAAGATCGAA
GCCGGAAAGA TCGAGGTGCG ACCGGATCGG TTCGCTCTCG ATGCCATGCT TGCGACGATA
TGCGATATGA TGCAGGAACG GGCGGTTGCC AGAAATCTGG CGTTCGCGCG GGAGATTGCG
AACCTGCCGC GCCTGGTGGT GGGTGATGAG AAACGCCTGT GGCAGGTGCT GGTTAATCTC
TTGAGTAATG CGATCAAGTT TACGCGAGAA GGTGTGGTGA CCCTTAAGGT CGAGAGATTG
CCCGATAATC GAGATAAGGT CCGATTCGAG GTCATTGACA CCGGTATCGG AATTGCGCCT
GAATATCGCG AGGTGATTTT CCGTCCGTTC GAGCAGTTAG GCGCTCAGAC AGGCGAAAAA
GGAACGGGTT TGGGCCTGGC GATCGCGCGC GAATTGGTCA CTTTGATGGG TGGAACGTTA
CGGGTGCAGA GTGCGCCTGG CGCGGGAAGT CGATTCTGGT TTGCGATCCC GCTGCCGGAA
GCGCCGGCCG AGCCGTTGCT CCCAAAGCGG GCGTCACGCC GGGTGATCGG TGTTGCGGGT
CCTGCGCCCA AAGTGTTGAT TGTCGATGAC CATCCCGATA ACTGCGCGAT TCTGCGTGAT
ATGCTCCAAC CGTTAGGTAT CATCACGGCT GAGGCGCAGG ATGGCTATGA TGGATTAGAG
CGCATGGCGG TATTCAATCC CGATGCCATC GTTCTCGATC TGGTGATGCC GCGACTGAAT
GGAATAGACA TGATCCGGCG CATTCGTGCG AGCGCCGCAG GGGATCGCAT CGTGCTGATT
GTGAGTTCTG CCAGCGCCTA TCCGGATGAT CGTATCCAGA GTCTGAATGC CGGTGCGCAG
GCATTCATTC CCAAGCCGAT TGATCGCACC ATTCTGCTCG AAACGCTGCA ACGCCATCTT
CCCTGGGTCG AATGGCGCTA CGCCGAACCG TCCGTTGATC AGTCGCATTG GGCAGCGCCT
GTGCTGCTGC CGCGCACAAT GCTCGATTCG TTGGAAGAAC TGGCGCGTAT TGGCGATATT
GACGCTATTC AACAAAGGGT CGATGCATTG ATCCAGGAAA TGCCGCAGGC GGCCTCTTTT
GTCGCTCAGG TGCGATACTT TCTGGAACAT TTCCAGATAG GTCAGTTACA GGAGTTTCTG
AAAAAATCCA GGGCAGAGGG ATGA
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| Protein sequence | MIADASMSDG TLHATRPTIG LLTAIVNQPF WLGVVDAARR HGVNLICFLS GTLPVRSQAL
LRVPYLQVLP ALSFFALANS ERLDGLITWG GSRSGFGINL DDAEMEEFIA PFRRLPMVNY
EGLIQGVPSV VTDTRQGMRT LLEHLIERHQ RCRIAFIRGP QRHMESEERF AAYQETLRAF
GIPFDSALVY HDLRWGKIVG IEAARELISK RRLRPGADFD ALVGSEIEYA LGALHTLQES
GVRVPDEVAV VGFNDHLDAQ TLDLPITVVA KPFYESGVVA VGALLDRIAG KSIPDRIHVP
ARLIVRRSCG CWSPDRSAPV LSGDLVEARG DRLVAQIGRL RDTIDADIDR SWINVLIEGL
LPGMPDRHDQ ERDQFWSAFE RELSRRRTRQ ELAQWHDVIS ELFYLIVSAL DHADDMPRAN
LLFLQRIRLA LAQERERSRI ELRTRTIEQS HTLLEISQSM LIAQDLKYLL EVLAQRLPEL
PVRDGYLVLY DDFPPTTNLE APVWGRVVLA LHEGRRLPLP PDGISFPSRR IVPDALLCEH
QPYAFIVTPL FFGLRDFGFI AVQVGPREGG VYHMLAQEIS SALQSVFLWR DYRRSEYARR
ESEARLHTIV EHMPVALWAK DLNGRYIMQN SVMRTLTGDN SWKDEDSGGA ALAEWAPYEA
WAREGRTVSF EHALLVQDQP RLFKHIIAPV QVDGTVTAIL GLMFDITEQR TLEDSLRSAK
ESAEEARRAA EAANRAKSVF LSNISHELRT PLNSILGYAQ ILEHDPTTSD YARKSLRVIQ
SSGEQLLNLI DDLLDLAKIE AGKIEVRPDR FALDAMLATI CDMMQERAVA RNLAFAREIA
NLPRLVVGDE KRLWQVLVNL LSNAIKFTRE GVVTLKVERL PDNRDKVRFE VIDTGIGIAP
EYREVIFRPF EQLGAQTGEK GTGLGLAIAR ELVTLMGGTL RVQSAPGAGS RFWFAIPLPE
APAEPLLPKR ASRRVIGVAG PAPKVLIVDD HPDNCAILRD MLQPLGIITA EAQDGYDGLE
RMAVFNPDAI VLDLVMPRLN GIDMIRRIRA SAAGDRIVLI VSSASAYPDD RIQSLNAGAQ
AFIPKPIDRT ILLETLQRHL PWVEWRYAEP SVDQSHWAAP VLLPRTMLDS LEELARIGDI
DAIQQRVDAL IQEMPQAASF VAQVRYFLEH FQIGQLQEFL KKSRAEG
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