Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3085 |
Symbol | |
ID | 5540581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3996347 |
End bp | 3997393 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640895204 |
Product | signal peptide peptidase SppA, 36K type |
Protein accession | YP_001433157 |
Protein GI | 156743028 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGATC AACCGCCTGT TTCCGCTCCG GTTCCGCTGG CGCAACCGGC GCCGCGAAAA GACCGGACGT GGATTGTTGT CATTTCGATC ATTGTGGGCA TTGTGCTGGC GTGCGCCATT TTGCCGCTCG GTGGCATGGC GTTGCTGCTG GCGTTCGATG GCGGCAATGC GGCTGCGACA GTTCCCGGCA GCAGATGGCA GGAAGAGGTC ATCTCTGGAC GAGGAAATGA TCGCATCGTG GTTATTACCG TTAGCGGCAC AATTGGGGCC GACGCAGGCG ATGGCTTGTT CACCACAGGG TTGAGCCACG AGCAGTTGCT GTCGCAGATT CGCACTGCTG CAAACGACTC GCGGGTGAAG GCGGTGGTGC TGCGGGTGGA TAGCCCTGGC GGCAGCGTCG TTGCCAGCAA TGAGTTGTAT GTCGAACTCA AGAAATTGCG AGAAAAAGGG AAGCCGCTGG TGATCTCGAT GGGTTCAATT GCAGCCAGCG GTGGATACTA TATCTCGATG GCGGGCGAAC GCATCTATGC CAACCCGGAT ACGCTCACCG GCAGCCTTGG GGTCATTGTG TCGCTGCTGA ACTATGATGA AGCCTTTGAA CGCCTTGGTC TGCGCGAGTA TGTGTACAAA AGCGGTGATT TCAAGGATAT CGGTTCGCCA CTGCGCCCGC CGCAGCCGGA GGAAGAGGCG ATCTGGAATG CGCTGGTCGA TGAGGCGTAC CAGGGGTTTA TCGATGTGAT TGTCGAGGGG CGCGGGATGG AACGCACTGA GGTGATCCGG CTCGCCGACG GGCGAATCTA CACCGGGCGA CAGGCGAAAG CGCTGGGTTT GATCGATGAA CTTGGCAACC TGGAAGATGC AATCGAAGGT GCAAAAGAAC TGGCGGGGTT GACCGATGCG TTGATTGTGC GCTATCGTTC GTTCAATACG CTGCGCGAAT TGTTGCAGGC AAATCTGGAA CAGAACCTGC AACCGTCTGA TCCACTGGGG TTGCGCGCTA TCGCGCAGCC GCGCGCGCCA CGGTTGGAGT ATCGGTTTGT TCCTTGA
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Protein sequence | MSDQPPVSAP VPLAQPAPRK DRTWIVVISI IVGIVLACAI LPLGGMALLL AFDGGNAAAT VPGSRWQEEV ISGRGNDRIV VITVSGTIGA DAGDGLFTTG LSHEQLLSQI RTAANDSRVK AVVLRVDSPG GSVVASNELY VELKKLREKG KPLVISMGSI AASGGYYISM AGERIYANPD TLTGSLGVIV SLLNYDEAFE RLGLREYVYK SGDFKDIGSP LRPPQPEEEA IWNALVDEAY QGFIDVIVEG RGMERTEVIR LADGRIYTGR QAKALGLIDE LGNLEDAIEG AKELAGLTDA LIVRYRSFNT LRELLQANLE QNLQPSDPLG LRAIAQPRAP RLEYRFVP
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