Gene Rcas_3044 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_3044 
Symbol 
ID5540540 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3947010 
End bp3947729 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content60% 
IMG OID640895163 
ProductABC transporter related 
Protein accessionYP_001433116 
Protein GI156742987 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTGGC ATATTTCTGC AAATAATGAC GAACCGCTCA TTATTCTCGA TCGTGTATCG 
AAGAGCTACG AAGAAGCCGG GCATGAGCGC GTTGTGTTGC ACGATGTCAG TGCATCGTTT
GCGCGCGGCG AATTCGTGGT GCTCGTCGGC AAGAGCGGTT CGGGCAAGAG TACGTTGTTG
AACCTGGTCA GCGGTATCGA CACGCCGACA TCCGGTGAGA TTATCGTTGC CGGGCAGCCA
TTGACGCGCC TCTCGGAGCG TGATCGCACC CTGTTCCGTC GCCGTTCAGT CGGTTTCATC
TTTCAGTTCT ACAATCTTGT GCCAACGCTG ACGGTGCTTG AGAATCTGCT GCTGCCGCTC
GAACTGAATG GCCGGACGAC GGCGCGCGAC CGCAATGCTG CACTCGATCT GCTGGCGCAG
GTGGGACTTG CTGACCGGCG AAATGCCTAC CCCGACCGAC TTTCCGGCGG TGAGCAGCAG
CGGGTGGCAG TGGCGCGCGC ACTGGTGCAT GAACCTGTAC TCGTTCTGGC AGACGAGCCG
ACCGGTAACC TGGACAGCGA TACCAGTCAG CAGGTGCTCG ACCTGCTCGA TACCCTCACC
CGCCGTGCCG GCAAAAACCT CCTTATGGTC ACGCACAGCC CGGAAGTCGT CGGTCTAGCG
GATCGCCTCT TCCGCATTGT CGAAGGGCGC CTGGTGGAAG AAGACGTGCC GGTCCGGTAA
 
Protein sequence
MSWHISANND EPLIILDRVS KSYEEAGHER VVLHDVSASF ARGEFVVLVG KSGSGKSTLL 
NLVSGIDTPT SGEIIVAGQP LTRLSERDRT LFRRRSVGFI FQFYNLVPTL TVLENLLLPL
ELNGRTTARD RNAALDLLAQ VGLADRRNAY PDRLSGGEQQ RVAVARALVH EPVLVLADEP
TGNLDSDTSQ QVLDLLDTLT RRAGKNLLMV THSPEVVGLA DRLFRIVEGR LVEEDVPVR