Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_3044 |
Symbol | |
ID | 5540540 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3947010 |
End bp | 3947729 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640895163 |
Product | ABC transporter related |
Protein accession | YP_001433116 |
Protein GI | 156742987 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTGGC ATATTTCTGC AAATAATGAC GAACCGCTCA TTATTCTCGA TCGTGTATCG AAGAGCTACG AAGAAGCCGG GCATGAGCGC GTTGTGTTGC ACGATGTCAG TGCATCGTTT GCGCGCGGCG AATTCGTGGT GCTCGTCGGC AAGAGCGGTT CGGGCAAGAG TACGTTGTTG AACCTGGTCA GCGGTATCGA CACGCCGACA TCCGGTGAGA TTATCGTTGC CGGGCAGCCA TTGACGCGCC TCTCGGAGCG TGATCGCACC CTGTTCCGTC GCCGTTCAGT CGGTTTCATC TTTCAGTTCT ACAATCTTGT GCCAACGCTG ACGGTGCTTG AGAATCTGCT GCTGCCGCTC GAACTGAATG GCCGGACGAC GGCGCGCGAC CGCAATGCTG CACTCGATCT GCTGGCGCAG GTGGGACTTG CTGACCGGCG AAATGCCTAC CCCGACCGAC TTTCCGGCGG TGAGCAGCAG CGGGTGGCAG TGGCGCGCGC ACTGGTGCAT GAACCTGTAC TCGTTCTGGC AGACGAGCCG ACCGGTAACC TGGACAGCGA TACCAGTCAG CAGGTGCTCG ACCTGCTCGA TACCCTCACC CGCCGTGCCG GCAAAAACCT CCTTATGGTC ACGCACAGCC CGGAAGTCGT CGGTCTAGCG GATCGCCTCT TCCGCATTGT CGAAGGGCGC CTGGTGGAAG AAGACGTGCC GGTCCGGTAA
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Protein sequence | MSWHISANND EPLIILDRVS KSYEEAGHER VVLHDVSASF ARGEFVVLVG KSGSGKSTLL NLVSGIDTPT SGEIIVAGQP LTRLSERDRT LFRRRSVGFI FQFYNLVPTL TVLENLLLPL ELNGRTTARD RNAALDLLAQ VGLADRRNAY PDRLSGGEQQ RVAVARALVH EPVLVLADEP TGNLDSDTSQ QVLDLLDTLT RRAGKNLLMV THSPEVVGLA DRLFRIVEGR LVEEDVPVR
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