| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2942 |
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| Symbol | |
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| ID | 5540432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3816898 |
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| End bp | 3817593 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640895062 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001433021 |
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| Protein GI | 156742892 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00611341 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCCCCC TCTACGACAA TGTCCACGCG CGATCTTTTC CGTTTGTCAA CTGGGCGATT
ATTCTTGCCA ACATTGCGTT CTTCCTCATC GAAGTTGCGC TTGGACCCGA TGCCGAGCGG
TTCGTGACCA TGTTTGCGGT CGTTCCTGCG CGGTTGCTTG CCAATCCAGG TCCAGATCAG
ATCGCTACGC TTTTTACATC GATGTTCCTT CACGGCGGAT GGTCGCACCT GTTGAGCAAT
ATGCTGGCGC TCTATATCTT TGGCGATAAC GTCGAAGATC GGATGGGGGG TGGACGCTAC
CTGACGTTTT ACATCATCTG CGGATTGATC GCAGCCCTGA CTCACATATT GTTCAACCCG
GATTCGCCGA TTCCGACGAT CGGTGCGAGT GGCGCGATCA GCGGCGTGCT CGGCGCGTAT
CTGATCCTCT ATCCGACAGC GCGGGTGATC ACGCTGATCC CGATCTTTTT TCTTCCCTGG
TTCGTTGAAA TCCCGGCGCT GGTCTACCTG GGAGTGTGGT TCCTGTCACA GTTGCTCAAC
GGCACGCTGG CGATCATCAT TGGCGCGCAG GGGTTCGGCG GCGTGGCGTG GTGGGCGCAT
GCCGGCGGTT TCGTCGCCGG CATTGTACTC GTGGGTCTCT TCATTCAACG TCGCAGCCGG
CGGCGCGTCT ATGCGGACGA GTACTGGCCC TGGTGA
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| Protein sequence | MIPLYDNVHA RSFPFVNWAI ILANIAFFLI EVALGPDAER FVTMFAVVPA RLLANPGPDQ
IATLFTSMFL HGGWSHLLSN MLALYIFGDN VEDRMGGGRY LTFYIICGLI AALTHILFNP
DSPIPTIGAS GAISGVLGAY LILYPTARVI TLIPIFFLPW FVEIPALVYL GVWFLSQLLN
GTLAIIIGAQ GFGGVAWWAH AGGFVAGIVL VGLFIQRRSR RRVYADEYWP W
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