Gene Rcas_2916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2916 
Symbol 
ID5540406 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3778449 
End bp3780179 
Gene Length1731 bp 
Protein Length576 aa 
Translation table11 
GC content61% 
IMG OID640895037 
Productintegral membrane sensor signal transduction histidine kinase 
Protein accessionYP_001432996 
Protein GI156742867 
COG category[T] Signal transduction mechanisms 
COG ID[COG2205] Osmosensitive K+ channel histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCACA TGCCCGCCGA TCCGCCGTCC GTTCCCGCTT CCAATCAACC GACGCCATGG 
TGGGTCATTG CAGGCTGGAC GGTCGTCGTT TTGATTGTGC CGATCATGCT GGCGCTTGTA
AACGTCTTTC CTGACCTGGA TCGTCGGGTT GTGATGTCGC CAGTCCTGTA CTTCTCGCTG
GTTGCCGCTG TTGCCGTGTC GGGCATCGCA GTGGCGCTGG CGGTGATCAT CGCGGCGCTT
CAGGCGCTCG ATGGACGCGC CCTGGCAACC GGCCTGGGCC TCTTGTGCGG CGCAGCAATC
TTTCTGATCC ACGCTCTCGT CGACGCTGCG CTGCCCAATG CGCGACCGGA TCTGCCGATC
ATCGGGCAGG TGATCGTCAG TACCTTTCTC GTGTTGGGCG CCTTTGATCC ACTCTCCCGG
TCGCGCGATC CACTGCGCCG ACAGTGGCCG CGTCTCCTGG CATTGAGCGC TCTTGTGCTG
ATTGCCGGCG CGTTCTGGTC GATCGTTCTG GAAACGTCGG AGCACGCCGC TGCGTGGCTT
ATCGGCGCTT CCGTCACCAT CGTTGCCTGT GGCATTGCGC TCTGGCGATA TATTCAATTA
TACCGGCAAT CGTCGCTTCA TCGCTCGTTT GCCTTATTGG CGGGCATTGT ATTGCTCGGT
GAAGCGGCGC TTGCGCGCCT GTTCACTGCC TCGGCGTTCA ACGTTCCGTT CTGGCTATGC
CACTTCGCCA TAGCAACCGG TATGGCGTTC ATTGCGTATG CGTTCCTCTA CGAAGTACGC
AGTCAACGCC AGCGCAACCT GATGCAACGC GCTGCATACG AACAGGCGCG TCCGGTGTTA
GTCGCGGCGA TGGATGTGGT GATCGAAACA CTGGAACGCG GCGATCCGTT CCCACCTGAC
ACGCGCATCC GCTTTCAGCG CGAGGCGGGC TTATCCGATG CGCAGATCGA CGCACTGGAG
CGTCTGGCGC TTGCCATAGC GCGTGAGCGG CGGCAGCGTG AGGCATTGGC GCAACTCGAC
GAGTTGCTGC GTCGGAGCGA GCGTAACACC GCTTTGCTGG CGCAGATGGT CATTCACGAT
TTGAAGAATC CGCTGACGGC GCTGATCGGG TTCCTGGAAC TCTTGAGCGC TGCGGATCTG
AGCGAGTCGC AACGATCCCT GATCGATAGC GCACTGCGTA ATGGACGTGA TCTGGCGGGT
CTTGTTGACG ACTTGCTTGA TCTGATCCGG TACAACGAGG GGCGACTGCG ATTGCGCCTG
GGTGATGTGT CGCTGCCCGT TCTCTGCGCC GAGTGCGCCG ATGAACTTGC CGGATGGCTG
CTCTACGAGT CCAAGACGCT GATCCTCGAC GTATCGCCGA CGCTGCCGCT GATACGGGCT
GATGCCAGAA TTCTGAAACG CATTCTGCTT AACCTCCTCT CGAATGCGAT CAAGCACACG
CCGCGCGGAA CGCTCATCAC GCTGCGCGTC TGGCGCGAAC CGCATCCCGA TCGCGGGGAA
CAAACCGTCA TCGAAGTCGC CGACACCGGT CCCGGCATTC CTCCAGAACG TATTGAACGT
CTCTTCGAGC CATTTGGGGC AGCAGGCGAG AGCCGTTCCC TCCGTCAGAG CAGCACCGGG
CTTGGGCTTG CATTCTGCAA AATGGCCGTC ACTGCCCATG GCGGAACCAT CGAGGTCAGT
AGTTTTCCCG GCGATGGTGC GACCTTCCGC ATCCGATTGC CCGATCTCTG A
 
Protein sequence
MSHMPADPPS VPASNQPTPW WVIAGWTVVV LIVPIMLALV NVFPDLDRRV VMSPVLYFSL 
VAAVAVSGIA VALAVIIAAL QALDGRALAT GLGLLCGAAI FLIHALVDAA LPNARPDLPI
IGQVIVSTFL VLGAFDPLSR SRDPLRRQWP RLLALSALVL IAGAFWSIVL ETSEHAAAWL
IGASVTIVAC GIALWRYIQL YRQSSLHRSF ALLAGIVLLG EAALARLFTA SAFNVPFWLC
HFAIATGMAF IAYAFLYEVR SQRQRNLMQR AAYEQARPVL VAAMDVVIET LERGDPFPPD
TRIRFQREAG LSDAQIDALE RLALAIARER RQREALAQLD ELLRRSERNT ALLAQMVIHD
LKNPLTALIG FLELLSAADL SESQRSLIDS ALRNGRDLAG LVDDLLDLIR YNEGRLRLRL
GDVSLPVLCA ECADELAGWL LYESKTLILD VSPTLPLIRA DARILKRILL NLLSNAIKHT
PRGTLITLRV WREPHPDRGE QTVIEVADTG PGIPPERIER LFEPFGAAGE SRSLRQSSTG
LGLAFCKMAV TAHGGTIEVS SFPGDGATFR IRLPDL