Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2916 |
Symbol | |
ID | 5540406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3778449 |
End bp | 3780179 |
Gene Length | 1731 bp |
Protein Length | 576 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640895037 |
Product | integral membrane sensor signal transduction histidine kinase |
Protein accession | YP_001432996 |
Protein GI | 156742867 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTCACA TGCCCGCCGA TCCGCCGTCC GTTCCCGCTT CCAATCAACC GACGCCATGG TGGGTCATTG CAGGCTGGAC GGTCGTCGTT TTGATTGTGC CGATCATGCT GGCGCTTGTA AACGTCTTTC CTGACCTGGA TCGTCGGGTT GTGATGTCGC CAGTCCTGTA CTTCTCGCTG GTTGCCGCTG TTGCCGTGTC GGGCATCGCA GTGGCGCTGG CGGTGATCAT CGCGGCGCTT CAGGCGCTCG ATGGACGCGC CCTGGCAACC GGCCTGGGCC TCTTGTGCGG CGCAGCAATC TTTCTGATCC ACGCTCTCGT CGACGCTGCG CTGCCCAATG CGCGACCGGA TCTGCCGATC ATCGGGCAGG TGATCGTCAG TACCTTTCTC GTGTTGGGCG CCTTTGATCC ACTCTCCCGG TCGCGCGATC CACTGCGCCG ACAGTGGCCG CGTCTCCTGG CATTGAGCGC TCTTGTGCTG ATTGCCGGCG CGTTCTGGTC GATCGTTCTG GAAACGTCGG AGCACGCCGC TGCGTGGCTT ATCGGCGCTT CCGTCACCAT CGTTGCCTGT GGCATTGCGC TCTGGCGATA TATTCAATTA TACCGGCAAT CGTCGCTTCA TCGCTCGTTT GCCTTATTGG CGGGCATTGT ATTGCTCGGT GAAGCGGCGC TTGCGCGCCT GTTCACTGCC TCGGCGTTCA ACGTTCCGTT CTGGCTATGC CACTTCGCCA TAGCAACCGG TATGGCGTTC ATTGCGTATG CGTTCCTCTA CGAAGTACGC AGTCAACGCC AGCGCAACCT GATGCAACGC GCTGCATACG AACAGGCGCG TCCGGTGTTA GTCGCGGCGA TGGATGTGGT GATCGAAACA CTGGAACGCG GCGATCCGTT CCCACCTGAC ACGCGCATCC GCTTTCAGCG CGAGGCGGGC TTATCCGATG CGCAGATCGA CGCACTGGAG CGTCTGGCGC TTGCCATAGC GCGTGAGCGG CGGCAGCGTG AGGCATTGGC GCAACTCGAC GAGTTGCTGC GTCGGAGCGA GCGTAACACC GCTTTGCTGG CGCAGATGGT CATTCACGAT TTGAAGAATC CGCTGACGGC GCTGATCGGG TTCCTGGAAC TCTTGAGCGC TGCGGATCTG AGCGAGTCGC AACGATCCCT GATCGATAGC GCACTGCGTA ATGGACGTGA TCTGGCGGGT CTTGTTGACG ACTTGCTTGA TCTGATCCGG TACAACGAGG GGCGACTGCG ATTGCGCCTG GGTGATGTGT CGCTGCCCGT TCTCTGCGCC GAGTGCGCCG ATGAACTTGC CGGATGGCTG CTCTACGAGT CCAAGACGCT GATCCTCGAC GTATCGCCGA CGCTGCCGCT GATACGGGCT GATGCCAGAA TTCTGAAACG CATTCTGCTT AACCTCCTCT CGAATGCGAT CAAGCACACG CCGCGCGGAA CGCTCATCAC GCTGCGCGTC TGGCGCGAAC CGCATCCCGA TCGCGGGGAA CAAACCGTCA TCGAAGTCGC CGACACCGGT CCCGGCATTC CTCCAGAACG TATTGAACGT CTCTTCGAGC CATTTGGGGC AGCAGGCGAG AGCCGTTCCC TCCGTCAGAG CAGCACCGGG CTTGGGCTTG CATTCTGCAA AATGGCCGTC ACTGCCCATG GCGGAACCAT CGAGGTCAGT AGTTTTCCCG GCGATGGTGC GACCTTCCGC ATCCGATTGC CCGATCTCTG A
|
Protein sequence | MSHMPADPPS VPASNQPTPW WVIAGWTVVV LIVPIMLALV NVFPDLDRRV VMSPVLYFSL VAAVAVSGIA VALAVIIAAL QALDGRALAT GLGLLCGAAI FLIHALVDAA LPNARPDLPI IGQVIVSTFL VLGAFDPLSR SRDPLRRQWP RLLALSALVL IAGAFWSIVL ETSEHAAAWL IGASVTIVAC GIALWRYIQL YRQSSLHRSF ALLAGIVLLG EAALARLFTA SAFNVPFWLC HFAIATGMAF IAYAFLYEVR SQRQRNLMQR AAYEQARPVL VAAMDVVIET LERGDPFPPD TRIRFQREAG LSDAQIDALE RLALAIARER RQREALAQLD ELLRRSERNT ALLAQMVIHD LKNPLTALIG FLELLSAADL SESQRSLIDS ALRNGRDLAG LVDDLLDLIR YNEGRLRLRL GDVSLPVLCA ECADELAGWL LYESKTLILD VSPTLPLIRA DARILKRILL NLLSNAIKHT PRGTLITLRV WREPHPDRGE QTVIEVADTG PGIPPERIER LFEPFGAAGE SRSLRQSSTG LGLAFCKMAV TAHGGTIEVS SFPGDGATFR IRLPDL
|
| |