Gene Rcas_2747 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2747 
Symbol 
ID5540233 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3554909 
End bp3556411 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content59% 
IMG OID640894873 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001432836 
Protein GI156742707 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCATCAC AGCGCACGAT TCTAATTACC ACCGGCTTGA TGCTCAGCCT ATTCCTGGCA 
TCAATGGAAT CGACCGTCGT TAGCACCGGT ATGCCGACGA TAGTCAGCCA GCTGGGGGGT
CTCGAACATT ACAGTTGGGT CTTTACCGCT TTTATGCTCG CCTCCACAAC GATGGTTCCC
CTGTACGGGA AACTCTCCGA CCTCTTCGGT CGCCGACCTG TGTTTCTGGC AGCGATGGCA
ATCTTTCTGA TCGGGTCCGT GCTCTGCGGG CTGGCGGTCA CCATGCCGCA ATTGATTGCC
TTTCGCGCCA TTCAGGGTAT TGGCGCGGGC GGGTTGTTGC CGCTGGTGTT CATCATCATC
GGTGACCTGT TTTCGCTGGA ACAGCGCGCC CGGTTGCAAG GGCTGTTTTC GGGCGTGTGG
GGGGTGTCGT CGATCATCGG ACCGTTGCTC GGCGGATTCA TTGTGGATCA GGCATCGTGG
GAGTGGATTT TCTGGATCAA TATCATCCCC GGACTGATCG CAACCGCAAT TGTCTGGTTC
GCCTGGGTTG ATCGTCCGCG CGCCCACAAC GCACCCAAAC GTTCAATCGA CTATGCCGGA
GCGGTGTTGC TCACTGCCGG TGCGGTGGCG CTCCTCATGA GCCTGACCGA CCTGAGCGCA
TCGTGGGCGC TGCCGACATT GGTCGGCGCG CTGGCGATGT TTGGCGCACT GGTGTGGATC
GAACGACGCG CCAGCGATCC CGTGTTGCCT GTCGGTCTAT TCTGCGACCG GATGTTCCTG
GTTGCATGCG GGCATGGCAT CCTGGCCGGC TGCGCCGTCT TTGGCGGCGC TACATTCGTG
CCGCTCTATG CGCAAGGAGT GTTGGGGACG AGCGCAACCG AGGCTGGCGC AGCACTGATG
CCGATGTTGC TCGCGTGGGT TTTTTCCAGC ATTATTGGAA CGCGCATGCT GCTGCGTGTG
GGATATCGCA CGGTTGCGTT CGCGGGGATG ATTGCGCTGG TCATCGGCTC ATTTCCGCTT
ATGTTTGTTG ACGCACGGAC AAATCGACTC CTGCTGATGG TGTATCTGGG ACTGATGGGA
TTTGGTATGG GTTTTTCGAT TCCGGCATTT CTCATCGCGG TGCAGAGCAG TGTCGAGCGC
GGCAAACTGG GAACCGCCAC GTCAACCCTG CAATTCAGCC GCAGCATTGG CGGCGCGTTT
GGCATCGGCA TTATGGGCGC CGTTCTGAGC GCGACGGTGA CCACCCGGCT GGAAACCGCA
GGACTCGATG CATCTGTATC GCTCAACAGT CTGATCGACC CGTTGGGAGG CGACATTGCA
GTAAGCGAGA CGCTGCGTGC AGCACTGGGA GCAGGCATTA GCAGCGTGTT TGTGGTCGCA
TTTATTGCGG CAGCACTGGG ATTGCTGGTC ACGCTTATGG CGCCGCGCGG ATTGATTGCA
GATGCAGCCG CTGAACGCGG GCGCGACGAG GGAATGGCGC AGCCAGCAGT CGAGCGGAGG
TAG
 
Protein sequence
MSSQRTILIT TGLMLSLFLA SMESTVVSTG MPTIVSQLGG LEHYSWVFTA FMLASTTMVP 
LYGKLSDLFG RRPVFLAAMA IFLIGSVLCG LAVTMPQLIA FRAIQGIGAG GLLPLVFIII
GDLFSLEQRA RLQGLFSGVW GVSSIIGPLL GGFIVDQASW EWIFWINIIP GLIATAIVWF
AWVDRPRAHN APKRSIDYAG AVLLTAGAVA LLMSLTDLSA SWALPTLVGA LAMFGALVWI
ERRASDPVLP VGLFCDRMFL VACGHGILAG CAVFGGATFV PLYAQGVLGT SATEAGAALM
PMLLAWVFSS IIGTRMLLRV GYRTVAFAGM IALVIGSFPL MFVDARTNRL LLMVYLGLMG
FGMGFSIPAF LIAVQSSVER GKLGTATSTL QFSRSIGGAF GIGIMGAVLS ATVTTRLETA
GLDASVSLNS LIDPLGGDIA VSETLRAALG AGISSVFVVA FIAAALGLLV TLMAPRGLIA
DAAAERGRDE GMAQPAVERR