Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2747 |
Symbol | |
ID | 5540233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 3554909 |
End bp | 3556411 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640894873 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001432836 |
Protein GI | 156742707 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCATCAC AGCGCACGAT TCTAATTACC ACCGGCTTGA TGCTCAGCCT ATTCCTGGCA TCAATGGAAT CGACCGTCGT TAGCACCGGT ATGCCGACGA TAGTCAGCCA GCTGGGGGGT CTCGAACATT ACAGTTGGGT CTTTACCGCT TTTATGCTCG CCTCCACAAC GATGGTTCCC CTGTACGGGA AACTCTCCGA CCTCTTCGGT CGCCGACCTG TGTTTCTGGC AGCGATGGCA ATCTTTCTGA TCGGGTCCGT GCTCTGCGGG CTGGCGGTCA CCATGCCGCA ATTGATTGCC TTTCGCGCCA TTCAGGGTAT TGGCGCGGGC GGGTTGTTGC CGCTGGTGTT CATCATCATC GGTGACCTGT TTTCGCTGGA ACAGCGCGCC CGGTTGCAAG GGCTGTTTTC GGGCGTGTGG GGGGTGTCGT CGATCATCGG ACCGTTGCTC GGCGGATTCA TTGTGGATCA GGCATCGTGG GAGTGGATTT TCTGGATCAA TATCATCCCC GGACTGATCG CAACCGCAAT TGTCTGGTTC GCCTGGGTTG ATCGTCCGCG CGCCCACAAC GCACCCAAAC GTTCAATCGA CTATGCCGGA GCGGTGTTGC TCACTGCCGG TGCGGTGGCG CTCCTCATGA GCCTGACCGA CCTGAGCGCA TCGTGGGCGC TGCCGACATT GGTCGGCGCG CTGGCGATGT TTGGCGCACT GGTGTGGATC GAACGACGCG CCAGCGATCC CGTGTTGCCT GTCGGTCTAT TCTGCGACCG GATGTTCCTG GTTGCATGCG GGCATGGCAT CCTGGCCGGC TGCGCCGTCT TTGGCGGCGC TACATTCGTG CCGCTCTATG CGCAAGGAGT GTTGGGGACG AGCGCAACCG AGGCTGGCGC AGCACTGATG CCGATGTTGC TCGCGTGGGT TTTTTCCAGC ATTATTGGAA CGCGCATGCT GCTGCGTGTG GGATATCGCA CGGTTGCGTT CGCGGGGATG ATTGCGCTGG TCATCGGCTC ATTTCCGCTT ATGTTTGTTG ACGCACGGAC AAATCGACTC CTGCTGATGG TGTATCTGGG ACTGATGGGA TTTGGTATGG GTTTTTCGAT TCCGGCATTT CTCATCGCGG TGCAGAGCAG TGTCGAGCGC GGCAAACTGG GAACCGCCAC GTCAACCCTG CAATTCAGCC GCAGCATTGG CGGCGCGTTT GGCATCGGCA TTATGGGCGC CGTTCTGAGC GCGACGGTGA CCACCCGGCT GGAAACCGCA GGACTCGATG CATCTGTATC GCTCAACAGT CTGATCGACC CGTTGGGAGG CGACATTGCA GTAAGCGAGA CGCTGCGTGC AGCACTGGGA GCAGGCATTA GCAGCGTGTT TGTGGTCGCA TTTATTGCGG CAGCACTGGG ATTGCTGGTC ACGCTTATGG CGCCGCGCGG ATTGATTGCA GATGCAGCCG CTGAACGCGG GCGCGACGAG GGAATGGCGC AGCCAGCAGT CGAGCGGAGG TAG
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Protein sequence | MSSQRTILIT TGLMLSLFLA SMESTVVSTG MPTIVSQLGG LEHYSWVFTA FMLASTTMVP LYGKLSDLFG RRPVFLAAMA IFLIGSVLCG LAVTMPQLIA FRAIQGIGAG GLLPLVFIII GDLFSLEQRA RLQGLFSGVW GVSSIIGPLL GGFIVDQASW EWIFWINIIP GLIATAIVWF AWVDRPRAHN APKRSIDYAG AVLLTAGAVA LLMSLTDLSA SWALPTLVGA LAMFGALVWI ERRASDPVLP VGLFCDRMFL VACGHGILAG CAVFGGATFV PLYAQGVLGT SATEAGAALM PMLLAWVFSS IIGTRMLLRV GYRTVAFAGM IALVIGSFPL MFVDARTNRL LLMVYLGLMG FGMGFSIPAF LIAVQSSVER GKLGTATSTL QFSRSIGGAF GIGIMGAVLS ATVTTRLETA GLDASVSLNS LIDPLGGDIA VSETLRAALG AGISSVFVVA FIAAALGLLV TLMAPRGLIA DAAAERGRDE GMAQPAVERR
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