Gene Rcas_2710 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2710 
Symbol 
ID5540196 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3498116 
End bp3499282 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content58% 
IMG OID640894836 
Productcyclic nucleotide-binding protein 
Protein accessionYP_001432799 
Protein GI156742670 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTCAAAG GCTGGTTCCA GCGTACAACA GCAACTGTTG CTGCACATGT TGAGGGTGCA 
TACCGGAACG GCAACACAAC CCTCATCGAA CTGCGCAACG TTAGCAAGAC CTTCGAAACA
GCAGCAGGAC CCTTCACCGC ACTCGATTCG ATCACACTCA ACGTGGATCG CGGCGAGTTT
GTGGCGATTA TCGGCAAGTC GGGCAGCGGC AAATCGACGC TTATGAACAT GATCTCTGGC
ATCGACCGAC CAACATCGGG CGAGGTGTTC ATTGGCGATA CCGCCGTCCA TACCCTGAAC
GAGAGCGAAA TGGCCGTCTG GCGCGGGCGC AACGTCGGCA TCGTCTTTCA ATTCTTCCAG
TTGCTCCCGG CGCTCTCGTT GGTCGAAAAC GTTATGCTGC CGATGGACTT CTGCGCCATG
TTTACGCCGC GCGAACGGCA CGAACGGGCA ATGATGCTGC TCGATCAGGT TGGCATGGCC
GATCAGGCGC ACAAACTTCC CGCCGCTATC TCTGGCGGTC AACAGCAGCG CGTTGCCATT
GCCCGCGCCC TTGCCAACAA TCCGCCGATC ATTCTTGCTG ATGAGCCAAC CGGCAACCTC
GACTCAAAGA CGGCGCAACA GGTGTTTGCC CTGTTCGAGC GTCTGGTCGA TCAGGGCAAA
ACCATTCTGA TGGTCACCCA CGACAGCGAC ATGGCGCGGC GGGTCAGTCG GGCGGTCATT
CTTGCCGATG GACGGATTGT TAACGAGTAT GTCGCGCAGG CGCTTTCCAC TCTAACACTC
GACCAGTTGG GATGGGTCAT GCGTCACGCT GAAACTCACA CCTATGCCCC TGGCGCCATT
ATTCTCAAAC AGGGCGAACC CGCCGACAAC TTCTATATCA TCACCAAAGG CGAGGTCGAG
GTCTTCATCG ATCATCCTGA CGGCGGCGAG ATCATCGTCA ACCACTTGAG CAGTGGCGCC
TACTTTGGTG AAATCGGGCT GCTGCGCGAA GGGTGTCGCA CTGCCAGTGT GCGCGCCAGT
TTTGTCACCG GCTGCGAAGT CGCCGTGCTC GACCGACAGG AGTTTCACAC GTTGCTGGCA
GAGTCGGAAA CGACTCGCCA CGTCATTGAT CGGGTTGCAC ACGAACGTGA TGCTCACACT
CGCGCGGCAG AAGCCAGCGC GTTGTAG
 
Protein sequence
MFKGWFQRTT ATVAAHVEGA YRNGNTTLIE LRNVSKTFET AAGPFTALDS ITLNVDRGEF 
VAIIGKSGSG KSTLMNMISG IDRPTSGEVF IGDTAVHTLN ESEMAVWRGR NVGIVFQFFQ
LLPALSLVEN VMLPMDFCAM FTPRERHERA MMLLDQVGMA DQAHKLPAAI SGGQQQRVAI
ARALANNPPI ILADEPTGNL DSKTAQQVFA LFERLVDQGK TILMVTHDSD MARRVSRAVI
LADGRIVNEY VAQALSTLTL DQLGWVMRHA ETHTYAPGAI ILKQGEPADN FYIITKGEVE
VFIDHPDGGE IIVNHLSSGA YFGEIGLLRE GCRTASVRAS FVTGCEVAVL DRQEFHTLLA
ESETTRHVID RVAHERDAHT RAAEASAL