| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2661 |
|---|
| Symbol | |
|---|
| ID | 5540143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3431191 |
|---|
| End bp | 3431853 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640894784 |
|---|
| Product | TrkA domain-containing protein |
|---|
| Protein accession | YP_001432751 |
|---|
| Protein GI | 156742622 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0569] K+ transport systems, NAD-binding component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.202256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGTGA TCATTGTCGG CGGCGGGAAG GTTGGCGCGC ATCTGGCAGG TCTGCTGATC
GCCAGCGATC ACCGGGTATG CGTCGTCGAA CCGCGCGCCA CTGCGCGCGA CCATCTGGCG
CAAACTCTGC CGCCGGAGAC GATTGTTGCA GGAAGCGGCA GCGATCCCGC CGTGCTGGAG
GCATGTGGCG CGCGCCAGGC GGATGTTGTG GCAGCCGTTA CCGGCGATGA TGAGGTCAAC
CTGGTAGTCA CAAGTCTGGC GCGCTTCGAG TTTCATGTGC CGCGCACGAT TGCGCGGGTG
AACAATCCGA AGAACGCATG GATGTTTACC GCCGAAATGG GGGTTGATGT CGCGCTGAGT
CAGGCGGATC TGATGGCGCA TCTCATTCTC GAAGAGATGT CGCTGGGCGA TATGATGACG
CTGCTCAAGT TGCGTCGCGG GCGCTACTCA CTCGTGGAAG AGAAAATCGC CGCCGATTCA
TTGGCGGTGG GACGCGCCAT CACCGATCTC AATCTGCCGC ACGAGTGCGT GATTGTCGCT
ATTATCCGGC GGGGTCGTCT GATTCCGCCC CACGGGGACA CCGTGCTGCA CGCTGGCGAC
GAAGTCCTGG CGTTGACAGC GGCTGAGCAG GTGCAGCGGC TGGCGGAGAT TCTGGGAGGG
TGA
|
|---|
| Protein sequence | MFVIIVGGGK VGAHLAGLLI ASDHRVCVVE PRATARDHLA QTLPPETIVA GSGSDPAVLE
ACGARQADVV AAVTGDDEVN LVVTSLARFE FHVPRTIARV NNPKNAWMFT AEMGVDVALS
QADLMAHLIL EEMSLGDMMT LLKLRRGRYS LVEEKIAADS LAVGRAITDL NLPHECVIVA
IIRRGRLIPP HGDTVLHAGD EVLALTAAEQ VQRLAEILGG
|
|---|
| |