| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2563 |
|---|
| Symbol | rnhB |
|---|
| ID | 5540045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3303963 |
|---|
| End bp | 3304637 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640894692 |
|---|
| Product | ribonuclease HII |
|---|
| Protein accession | YP_001432659 |
|---|
| Protein GI | 156742530 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0164] Ribonuclease HII |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00091403 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAG GATCTCCACC GACTGTTGAA GAAGAGCGGG CACTATGTGC TGTTGGGTAT
CGCGCTATCG CCGGGATCGA CGAAGCCGGA CGCGGATGCT GGGCGGGACC GGTGGTCGCT
GCGGCGGTGA TCCTGCCGGA GCGGGTGATT GCCAAGCCTG AGTTGCTCGA CGGCGTCGCT
GACTCAAAAA TGCTGACCCC TGCGCAGCGC GTCGCGCTCT TCGAGCGCAT CACCAGTCTG
GCAGTTGCCT GGGCAGTTGG ATCCGTACCG GCGCATGTGA TCGATAGCCA CGGCATTCTG
CCTGCCACGC GCCTGGCGAT GCAGGTGGCG CTCCTGCGTC TGCCGCTTCC CGCTGATGTG
CTGTTGATCG ATGCGGTGCG GCTCGACGGC TGGCCCCTCC CGCAGCGTGT GCTGGTCAAG
GGTGATGTGC GCTGCCTGTC GATTGCCGCT GCGTCGATCA TTGCCAAAGT GATGCGCGAC
CGGTTTATGG AAGGGCTTGG GCGATACTGG ACCCGGTATG GGTTCGCAGC ACACAAAGGG
TATGGGACTG CGGCGCACCA GGAGGCGCTG CGCCGCTACG GTCCTACACC GCACCACCGT
CTGACGTTCC GCCCACTGTG CGATATGGCG CCTGCCAATA TCCGGAACGC AGCGTTGGAA
GGAGAACAGC CATGA
|
|---|
| Protein sequence | MMKGSPPTVE EERALCAVGY RAIAGIDEAG RGCWAGPVVA AAVILPERVI AKPELLDGVA
DSKMLTPAQR VALFERITSL AVAWAVGSVP AHVIDSHGIL PATRLAMQVA LLRLPLPADV
LLIDAVRLDG WPLPQRVLVK GDVRCLSIAA ASIIAKVMRD RFMEGLGRYW TRYGFAAHKG
YGTAAHQEAL RRYGPTPHHR LTFRPLCDMA PANIRNAALE GEQP
|
|---|
| |