Gene Rcas_2549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2549 
Symbol 
ID5540031 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3289284 
End bp3289748 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content55% 
IMG OID640894679 
Productdehydratase 
Protein accessionYP_001432646 
Protein GI156742517 
COG category[I] Lipid transport and metabolism 
COG ID[COG2030] Acyl dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0407782 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.257026 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCACA AACAGTATTT CGAGGACTAC GCCATCGGCT TTCACCGTCG CACCATGGGG 
CGCACCATTA CAGAAGCCGA TGTGGTGCTG CACGCCGGGC AGACAGGCGA TTTCTATCCG
CACCATATGG ATGCAGAGTG GTGCAAGACG CAGGATTTCG GGCAGCGTAT TGCGCATGGC
ACGCTCATTT TCGGCGTCGC CATCGGCATG ACCGCCGGCG CCATCAACCC ACATGCTATG
TCGTATGGCT ATGATCGATT GCGGTTCATT CGCCCGGTCT TCATCAACGA TACGATCACC
GTCGAGGCGA CCATTACCGA AAAGCGCAAC CATCCGCGCC GCGCTGATCA TGGGATTGTC
GTCGAAACGA TCGAGGTGTT CAACCAGCAT CATGAAACGT TGCTGGTGTG TGAACATCTG
TATCTGGTGA AGCGACGCCA GACGTCGGTG CTTGCTGAAC ATTGA
 
Protein sequence
MTHKQYFEDY AIGFHRRTMG RTITEADVVL HAGQTGDFYP HHMDAEWCKT QDFGQRIAHG 
TLIFGVAIGM TAGAINPHAM SYGYDRLRFI RPVFINDTIT VEATITEKRN HPRRADHGIV
VETIEVFNQH HETLLVCEHL YLVKRRQTSV LAEH