| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2536 |
|---|
| Symbol | |
|---|
| ID | 5540018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3271810 |
|---|
| End bp | 3272559 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640894666 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001432633 |
|---|
| Protein GI | 156742504 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00129789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000000282251 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA CCGATCAGGT TGCAATCGTC ATTGGCGGAT CAGGCGCAAT CGGCTCGGCA
GTCGTCAAGA TGCTCGCGGA GAGTGGCGCG CGAGTGATGG CGGGGTATCA CCGGAATGCT
GCTGCGGCGG CGCAGGTGGT TGCCGCCTGC CAGGACACGC GCGGCGATGT GTCTGCGCAT
TGGGTTGATG TGCGCGATCC GCAATCGGTC GAAACGCTGG TCGGTGCTAC TATCGAAGCG
TATGGACGCC TGGATGCGAT GGTGTTCTGC GCAGGGGCGA TGCGTTTCAC GCCGGTCGAG
GCAATCAACG TCGCGCAGTG GAACGAGACG CTCACGTTGC ACCTCGATGG TGTCAGCAAT
GCCTGTCGCG CGGCGTTACG CCGGATGATG CGGCGGCGCT ACGGCAGGGT CGTTGCAGTC
GCGGCGCTGC ACGGTCTGGC AGGCGGACCG CAGCAGGCGG ATTTCTCGGC GGCGACCGGC
GGTGTGTTCG GATTGGTTCG GACGCTGGCG CGTGAGGCAG CACCCTGGAA TATCACGGTC
AACGCAGTTG CGCCCGGCCT CATCGAAACA CCGCAACTGG CAACGATCCC GGCAGAGATG
CGCCGCTGGG GAGAGCGGGT GATTGCACTG CGGCGCGTTG GGAAGCCGGA GGAAGTGGCG
GCAGCGATTG TCTTTCTGGC ATCGCCGCTT GCGTCATATA TCACCGGGCA GACGCTGGTT
GTTGATGGGG GTTGGCGAAT GGCGCCATAA
|
|---|
| Protein sequence | MDFTDQVAIV IGGSGAIGSA VVKMLAESGA RVMAGYHRNA AAAAQVVAAC QDTRGDVSAH
WVDVRDPQSV ETLVGATIEA YGRLDAMVFC AGAMRFTPVE AINVAQWNET LTLHLDGVSN
ACRAALRRMM RRRYGRVVAV AALHGLAGGP QQADFSAATG GVFGLVRTLA REAAPWNITV
NAVAPGLIET PQLATIPAEM RRWGERVIAL RRVGKPEEVA AAIVFLASPL ASYITGQTLV
VDGGWRMAP
|
|---|
| |