| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2535 |
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| Symbol | |
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| ID | 5540017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3269858 |
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| End bp | 3271333 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640894665 |
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| Product | zeta-phytoene desaturase |
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| Protein accession | YP_001432632 |
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| Protein GI | 156742503 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00482984 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000435247 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAATCTTC CGATCATTAT CGTCGGCGGC GGGCTTGGCG GTTTATCCGC CGCCATTCAT
CTGGCGGCGC GCGGGCAGCG CGTTGTGCTG CTCGAAAAGA ATGAGCGCGT CGGTGGTAAA
CTGAACCTGG TCGAAGCCGG TGGCTTCCGG TTCGACACCG GACCTTCGCT TCTCACCATG
CCCTGGGTGC TGCGCTCGGT CTTTGCTGCC GCAGGGCGAC GAATGGAGGA CTTTCTGACC
ATTACGCAAC TCGAACCGAT CTGCCGGTAT CGCTGGCTCG ACGGTACACG GTTCGACGCC
TATCAGAACC TGCCCCGTCT CGCCGAGGAG ATTGCGCGCA TCGAGCCGGC CGATGTTGCA
GGCTTTCTTC GTTTCCTTGC CTATGCCGAA CGCATCTATC GCGCTGCGGA AGGTCCGTTT
TTGCTGCGAC CATTCGATGG TGTGCGCGAT CTGCTCACGC CCGAACTGTT CAGCGGCGCC
TGGCAGATCG ACCCGTTTCG CACCGTTGAT CAGGCAGTCC GCAGTTTTTT CCGCAGCCCG
TACCTGCGCC AGGTGTTCAA CCGCTATGCG TCGTACAACG GCTCGTCACC CTTTCGGGCG
CCGGCAACGT TCAATCTCAT TCCTTATGTC GAGTTTGTAC AGGGCGCATG GCACGTCTGT
GGCGGAATGT ATCAGATCGC GCGCGCGCTT TCGGCGCTGG CAGGCGATCT TGGCGTGGAG
ATTCGCACGA ATGCGCCGGT CGAACGCATC GAGGTCAGTC ATGGCGCCGC CTGTGGTGTC
GTTCTGGCTG GCGGCGAGCG ATTGGCTGCG TCGCAGGTCA TCGTCAACGC CGATCCGCGC
CACGCCTATG CAACCCTGAT CCCTGGCACA GAAAAGACCG CAGCGCGCCT GGCGCGACTC
GAATCATCGT ACAGCGGGTT TGTGCTGCTG CTGGGGATCA ATCGCATCTA CTCCAACCTG
GCGCATCACA ATATTTTCTT CTCGTCCGAC TACCGCGCCG AGTTCAGGGC AATCGTCGAT
ATGCAGACGC CGGCGCCCGA CCCGACGATC TACATCTGTG CTGCATCCGT GACCGACCCT
GCAATGGCGC CGCCGGGACA CATGAATCTG TTCGTTCTGA TCAATGCGCC GACGCTCAAC
CCGCGGGTCA ACTGGGCGCG TGAAGCGCCC GGTTACCGCA ATCTGGTTCT GCATAAACTG
GAACACATGG GACTGGAGAA CCTGAGTCAG CATATCGTCT TCGAGCAAAT CTGGACGCCT
GCCACCATCA ATGAACGGTA CAACGCCCCT GGCGGCGCGA TCTATGGATT GGCGTCGAAC
AATCCATGGA CGGCATTCAT GCGTCCGCCG TTGCGCGCCC GCGAGGTGCG CGGCGTCTAC
TTTGTCGGCG GCGGCACGCA TCCCGGTGGC GGCATTCCGC TCGTGCTTCT CTCAGGGCGC
GCCGTTGCCG GGCGCGTTCT GGCAGACATC GCCTGA
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| Protein sequence | MNLPIIIVGG GLGGLSAAIH LAARGQRVVL LEKNERVGGK LNLVEAGGFR FDTGPSLLTM
PWVLRSVFAA AGRRMEDFLT ITQLEPICRY RWLDGTRFDA YQNLPRLAEE IARIEPADVA
GFLRFLAYAE RIYRAAEGPF LLRPFDGVRD LLTPELFSGA WQIDPFRTVD QAVRSFFRSP
YLRQVFNRYA SYNGSSPFRA PATFNLIPYV EFVQGAWHVC GGMYQIARAL SALAGDLGVE
IRTNAPVERI EVSHGAACGV VLAGGERLAA SQVIVNADPR HAYATLIPGT EKTAARLARL
ESSYSGFVLL LGINRIYSNL AHHNIFFSSD YRAEFRAIVD MQTPAPDPTI YICAASVTDP
AMAPPGHMNL FVLINAPTLN PRVNWAREAP GYRNLVLHKL EHMGLENLSQ HIVFEQIWTP
ATINERYNAP GGAIYGLASN NPWTAFMRPP LRAREVRGVY FVGGGTHPGG GIPLVLLSGR
AVAGRVLADI A
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