| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2530 |
|---|
| Symbol | |
|---|
| ID | 5540012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 3263032 |
|---|
| End bp | 3264012 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640894661 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001432628 |
|---|
| Protein GI | 156742499 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1125] ABC-type proline/glycine betaine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.484579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00171141 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTCA TCATCGCCGA TCGACTGACC AAAACGTTTC CCGGCGAGAC TCGTCCGGCA
GTCGATCAGG TATCATTCGA AATCAAGAAG GGTGAGTTCG TCGTTTTGCT GGGACCATCC
GGTTGCGGCA AGACGACACT GCTCAAGATG ATCAACCGTC TCTATGAGCC GACTGAGGGC
CGGCTGTTGA TTGATGGCGT CGATGCGCGG TCGATGCCTG CAACGGAATT GCGCCGTCGC
ATCGGGTATG TGATCCAGCA AACCGGTCTG TTTCCCCATT TGCGTATCGA ACAGAATATC
GCAGTCGTGC CACAGTTGCT CAAGTGGGAT CGCGCGCGGA TCGAAGCGCG GATCGATGAA
CTGCTTGATC TGGTAGAACT GCCGCGCGCG TACCGCAAGC GGTATCCGCG CCAACTCTCC
GGCGGCGAGC AGCAGCGCGT CGGTCTGGCG CGCGCGCTGG CTGCCGATCC ATCCCTTATG
CTGATGGACG AGCCGTTCGG CGCGCTCGAC GCTATCACGC GCGCCCGTTT GCAGGACGAA
CTGCTGCGTA TTCAGCAGCG CCTCCACAAA ACGATTCTGT TTGTGACCCA CGATGTGGAT
GAAGCGCTCC GCCTGGCGGA TCGGCTATTA ATTATGCGCG CCGGGCATAT CGTGCAGTTC
GACACGCCGC TGGCGGTGCT GGCAGCGCCA GCAGACGATT TCGTGCGCGA CCTGCTCAGC
ACGGATGATG TGCTGCGCCG CCTCAGTCTG CTGACTGTCG CCGACGCGCT GGCGGACAAC
GGCGCCGGCA AGCGCCTTGC CGAAAACGAT GCGCAGGAGA CGCTGCAACC AGGCGATACG
CTGCGTGAGG CGCTCATTCG CGTCCTGCGG GCAGGCGGTC AGGCGCTGCC GGTCGTCGCC
AATGGACAGA ACGTGGGGGA GATTTCGCCG GATACCATCG CCTCGGTGCT GACACGCACA
ACCCATGCGT TATCTGATTG A
|
|---|
| Protein sequence | MAFIIADRLT KTFPGETRPA VDQVSFEIKK GEFVVLLGPS GCGKTTLLKM INRLYEPTEG
RLLIDGVDAR SMPATELRRR IGYVIQQTGL FPHLRIEQNI AVVPQLLKWD RARIEARIDE
LLDLVELPRA YRKRYPRQLS GGEQQRVGLA RALAADPSLM LMDEPFGALD AITRARLQDE
LLRIQQRLHK TILFVTHDVD EALRLADRLL IMRAGHIVQF DTPLAVLAAP ADDFVRDLLS
TDDVLRRLSL LTVADALADN GAGKRLAEND AQETLQPGDT LREALIRVLR AGGQALPVVA
NGQNVGEISP DTIASVLTRT THALSD
|
|---|
| |