Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2499 |
Symbol | |
ID | 5539980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3221406 |
End bp | 3223211 |
Gene Length | 1806 bp |
Protein Length | 601 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640894629 |
Product | ABC transporter transmembrane region |
Protein accession | YP_001432597 |
Protein GI | 156742468 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCCAC TTCGCCGTTC GTTGACCTTC CTGAAGCCGT ATTGGAGATT ATCGGTTGGC GCGTTTATCA GCCTGACGCT CGCGGCCGTC GCCAATCTGG TTACGCCGCA GGTGCTGCGC ATGCTGATCG ATCAGGGAAT CGCAGAACGC AATACCAACG CACTGGTGTG GCTGGCGGCG GCGCTGGTGG GAATTGCGCT CGTGCGCGGT ATGTTCAGTT TCACGTCTGG CTTCTGGTCC GAAAAGGCGT CGCAGGCGGT CGCCTACGAT CTGCGCAACA CGCTCTTCGC CAAAATCCAG GGGTTGAGTT TCTCGTACCA CGACCGGGCG CAAACCGGGC AGTTGATGAC GCGCATTACC AGCGATGTCG AGCAGGTGCG CACCTTCATC GGCATGGGGT TGTTGCAACT GTTGAATGCT GCGGCGTTGA TTATTGGCTG CATTGGCGCA ATGCTGCTGA TGAACTGGCA ACTGGCGCTG CTCGTGTTGT TGACCGTTCC GTTGATGGTC GGAGTCATCG GCTTCTTCAT GAACGTTGTG CGGCCGCTCT TCGATCAGAT TCAGCAGCGT CTCGGCGCAC TCAACACGGC ACTCCAGGAG AATCTGGCCG GTGTGCGGGT GGTGCAGGCG TTTGCGCGTG AACCATACGA GTGGCAGCGT TACAATCGCC TGAATCAGCG CCTGCTCGAC GCCAACCTGC AATCGATCCG CGCGATGTCG CTGACATTCC CGCTTATCTT TTTCATCGGC AACCTGGGTA CCCTGGCGGT GATCTGGTTT GGCGGGTATC AGGTGATCGG CGGCGCACTG ACGATTGGCG AACTGGTAGC GTTCAATACC TACCTGGCGT TGCTCATCAT GCCGCTGATG ATGCTGGGGA TGATCATGGC GCAGATCACA CGCGCGGCGG TCAGCGCTGA GCGCATCTTC GAGGTGCTCG ATGTCGAGAA CGAAGTCCAC GACCGCCCCG GCGCCCGCCC GTTGCCGCCT ATCAAAGGGC AAGTCGCGTT CGAACGCGTC TGGTTTGGCT ATGGCGTGCG AGCCGATGGT CACGCTGCGC CTGATGGACG TCACCCGATC CGCGAGGAGA AGTACATTCT CAAGGATGTC TCGTTTGTTG CCGAACCGGG GCAGACGGTC GCTATTCTGG GAAAAACCGG CGCCGGCAAG AGCACAATTA TCAACCTGAT CCCCCGTTTC TATGATGTCA CCCATGGACG GGTCACGATT GACGGGATCG ATGTGCGCGA TGTGACACTG GAGAGCCTGC GGGCGCAGAT CGGGATTGTG TTGCAGGATA CAACGCTCTT CAGCGGCAGC GTGCGCGAAA ATATCGCCTA TGGTCGCCCT GATGCGAGTG ATGCCGAGGT CGAAGCGGCG GCGTGCGCTG CGCAGGCGCA CGAGTTCATT ATGGCGTTGC CGAATGGATA CCACACCATC ATCGGTGAAC GCGGCGTTGG GCTGTCGGGC GGACAGAAGC AGCGGATCGC CATCGCGCGC GCCCTTCTGC GCGATCCGCG CATTCTGATC CTCGACGACA GCACCTCTTC GGTCGATGCC GAAACCGAAT ATCAGATTCA ACTGGCGCTC GAACGGTTGA TGGAAGGGCG CACCTCATTT GTGATTGCGC AACGAATTAG CACGGTGCGT CGCGCCGACC TGATCCTGCT GCTGGACAAC GGGCGCGTTG TCGCGCAAGG AACGCACGAA GCGTTGCTGG CAACCAGTGC GCTCTACGGT GAGATCATCG ACTCGCAGTT CGGCGGGGTG CGAGAGGAAG TCGAGACGGC GGAGGTTGAA GGGTGA
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Protein sequence | MIPLRRSLTF LKPYWRLSVG AFISLTLAAV ANLVTPQVLR MLIDQGIAER NTNALVWLAA ALVGIALVRG MFSFTSGFWS EKASQAVAYD LRNTLFAKIQ GLSFSYHDRA QTGQLMTRIT SDVEQVRTFI GMGLLQLLNA AALIIGCIGA MLLMNWQLAL LVLLTVPLMV GVIGFFMNVV RPLFDQIQQR LGALNTALQE NLAGVRVVQA FAREPYEWQR YNRLNQRLLD ANLQSIRAMS LTFPLIFFIG NLGTLAVIWF GGYQVIGGAL TIGELVAFNT YLALLIMPLM MLGMIMAQIT RAAVSAERIF EVLDVENEVH DRPGARPLPP IKGQVAFERV WFGYGVRADG HAAPDGRHPI REEKYILKDV SFVAEPGQTV AILGKTGAGK STIINLIPRF YDVTHGRVTI DGIDVRDVTL ESLRAQIGIV LQDTTLFSGS VRENIAYGRP DASDAEVEAA ACAAQAHEFI MALPNGYHTI IGERGVGLSG GQKQRIAIAR ALLRDPRILI LDDSTSSVDA ETEYQIQLAL ERLMEGRTSF VIAQRISTVR RADLILLLDN GRVVAQGTHE ALLATSALYG EIIDSQFGGV REEVETAEVE G
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