Gene Rcas_2499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2499 
Symbol 
ID5539980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3221406 
End bp3223211 
Gene Length1806 bp 
Protein Length601 aa 
Translation table11 
GC content60% 
IMG OID640894629 
ProductABC transporter transmembrane region 
Protein accessionYP_001432597 
Protein GI156742468 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCCAC TTCGCCGTTC GTTGACCTTC CTGAAGCCGT ATTGGAGATT ATCGGTTGGC 
GCGTTTATCA GCCTGACGCT CGCGGCCGTC GCCAATCTGG TTACGCCGCA GGTGCTGCGC
ATGCTGATCG ATCAGGGAAT CGCAGAACGC AATACCAACG CACTGGTGTG GCTGGCGGCG
GCGCTGGTGG GAATTGCGCT CGTGCGCGGT ATGTTCAGTT TCACGTCTGG CTTCTGGTCC
GAAAAGGCGT CGCAGGCGGT CGCCTACGAT CTGCGCAACA CGCTCTTCGC CAAAATCCAG
GGGTTGAGTT TCTCGTACCA CGACCGGGCG CAAACCGGGC AGTTGATGAC GCGCATTACC
AGCGATGTCG AGCAGGTGCG CACCTTCATC GGCATGGGGT TGTTGCAACT GTTGAATGCT
GCGGCGTTGA TTATTGGCTG CATTGGCGCA ATGCTGCTGA TGAACTGGCA ACTGGCGCTG
CTCGTGTTGT TGACCGTTCC GTTGATGGTC GGAGTCATCG GCTTCTTCAT GAACGTTGTG
CGGCCGCTCT TCGATCAGAT TCAGCAGCGT CTCGGCGCAC TCAACACGGC ACTCCAGGAG
AATCTGGCCG GTGTGCGGGT GGTGCAGGCG TTTGCGCGTG AACCATACGA GTGGCAGCGT
TACAATCGCC TGAATCAGCG CCTGCTCGAC GCCAACCTGC AATCGATCCG CGCGATGTCG
CTGACATTCC CGCTTATCTT TTTCATCGGC AACCTGGGTA CCCTGGCGGT GATCTGGTTT
GGCGGGTATC AGGTGATCGG CGGCGCACTG ACGATTGGCG AACTGGTAGC GTTCAATACC
TACCTGGCGT TGCTCATCAT GCCGCTGATG ATGCTGGGGA TGATCATGGC GCAGATCACA
CGCGCGGCGG TCAGCGCTGA GCGCATCTTC GAGGTGCTCG ATGTCGAGAA CGAAGTCCAC
GACCGCCCCG GCGCCCGCCC GTTGCCGCCT ATCAAAGGGC AAGTCGCGTT CGAACGCGTC
TGGTTTGGCT ATGGCGTGCG AGCCGATGGT CACGCTGCGC CTGATGGACG TCACCCGATC
CGCGAGGAGA AGTACATTCT CAAGGATGTC TCGTTTGTTG CCGAACCGGG GCAGACGGTC
GCTATTCTGG GAAAAACCGG CGCCGGCAAG AGCACAATTA TCAACCTGAT CCCCCGTTTC
TATGATGTCA CCCATGGACG GGTCACGATT GACGGGATCG ATGTGCGCGA TGTGACACTG
GAGAGCCTGC GGGCGCAGAT CGGGATTGTG TTGCAGGATA CAACGCTCTT CAGCGGCAGC
GTGCGCGAAA ATATCGCCTA TGGTCGCCCT GATGCGAGTG ATGCCGAGGT CGAAGCGGCG
GCGTGCGCTG CGCAGGCGCA CGAGTTCATT ATGGCGTTGC CGAATGGATA CCACACCATC
ATCGGTGAAC GCGGCGTTGG GCTGTCGGGC GGACAGAAGC AGCGGATCGC CATCGCGCGC
GCCCTTCTGC GCGATCCGCG CATTCTGATC CTCGACGACA GCACCTCTTC GGTCGATGCC
GAAACCGAAT ATCAGATTCA ACTGGCGCTC GAACGGTTGA TGGAAGGGCG CACCTCATTT
GTGATTGCGC AACGAATTAG CACGGTGCGT CGCGCCGACC TGATCCTGCT GCTGGACAAC
GGGCGCGTTG TCGCGCAAGG AACGCACGAA GCGTTGCTGG CAACCAGTGC GCTCTACGGT
GAGATCATCG ACTCGCAGTT CGGCGGGGTG CGAGAGGAAG TCGAGACGGC GGAGGTTGAA
GGGTGA
 
Protein sequence
MIPLRRSLTF LKPYWRLSVG AFISLTLAAV ANLVTPQVLR MLIDQGIAER NTNALVWLAA 
ALVGIALVRG MFSFTSGFWS EKASQAVAYD LRNTLFAKIQ GLSFSYHDRA QTGQLMTRIT
SDVEQVRTFI GMGLLQLLNA AALIIGCIGA MLLMNWQLAL LVLLTVPLMV GVIGFFMNVV
RPLFDQIQQR LGALNTALQE NLAGVRVVQA FAREPYEWQR YNRLNQRLLD ANLQSIRAMS
LTFPLIFFIG NLGTLAVIWF GGYQVIGGAL TIGELVAFNT YLALLIMPLM MLGMIMAQIT
RAAVSAERIF EVLDVENEVH DRPGARPLPP IKGQVAFERV WFGYGVRADG HAAPDGRHPI
REEKYILKDV SFVAEPGQTV AILGKTGAGK STIINLIPRF YDVTHGRVTI DGIDVRDVTL
ESLRAQIGIV LQDTTLFSGS VRENIAYGRP DASDAEVEAA ACAAQAHEFI MALPNGYHTI
IGERGVGLSG GQKQRIAIAR ALLRDPRILI LDDSTSSVDA ETEYQIQLAL ERLMEGRTSF
VIAQRISTVR RADLILLLDN GRVVAQGTHE ALLATSALYG EIIDSQFGGV REEVETAEVE
G