Gene Rcas_2423 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2423 
Symbol 
ID5539904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp3116417 
End bp3117400 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content55% 
IMG OID640894553 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001432521 
Protein GI156742392 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.772391 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.978149 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAACT TCATTGCCCG ACGCCTGGTC AACATGTTCT TTTTGTTGAT AGTCGTTTCC 
TTTGTGGGAT TCTGGATCAT TCAGTTGCCG CCAGGATCGA TTCTTGATGT GCAGATTCAG
CGTCTGCGGA TGCAGGGCGG AAACCTCCCC GAATCGATGA TCCAGGCTTT GCGTGATCGC
TACGGCGTCG ATGATCCATT CTATGTTCAA TACTGGAAGT GGATTTCACG CTCGTTGCAG
GGCGATTTTG GCACCTCATT CGAGACCGAT CAGAAAGTTG CCGAGCGTAT CTATAACCGT
TTGGGCATTT CGTTTGGCTT GTCGTTGACG GCGCTCCTCT TCACCTGGCT GGTTGCGATT
CCGATTGGCG TCTACTCGGC AACCCATCGT TACACCTGGC CAGATTATTT GATCACCTTT
GTCCAGTTTT TAGGACTCTC CATCCCCGGA TTCCTGCTGG CGCTGATTTT GCTCATTACA
GCGTCACGCC TGTGGGATCA ACCGATTGGC GGTCTCTTCT CGCCGCAGTA TGCCGACGCG
CCCTGGAGCC TTGCCAAACT GTGGGACTTT ATTCGCCACG TCTGGATTGC GATCGTTGTC
CTGGCAATTG GAGCGACTGC CGGTTTGACG CGCGTGATGC GCGCTAATCT GCTCGATGTG
CTGAATATGC AGTACATCCA GACGGCGCGC GCGAAGGGAT TGAAAGAGTC GACCGTCATC
TGGAAGCATG CCGTGCGCAA CGCTATCCAC CCGCTGGTCA TGTCGCTTGG GACGCTGCTG
CCGGCGCTGG TGGTCGGTGA AACGCTGATT GCGATCATTT TGAGCCTGCC GACGATTGGT
CCCCTTTACC TCGATGCGTT GCGTTCGCAG GATATGTACC TGGCCGGAAC GATCCTCGTC
ATGCTGTCCG CGTTGCTGCT GGTTGGCAAC CTCATCGCCG ACCTGCTGCT CGCCTGGGTC
GATCCGCGTG TGCGGCTCGA ATAA
 
Protein sequence
MLNFIARRLV NMFFLLIVVS FVGFWIIQLP PGSILDVQIQ RLRMQGGNLP ESMIQALRDR 
YGVDDPFYVQ YWKWISRSLQ GDFGTSFETD QKVAERIYNR LGISFGLSLT ALLFTWLVAI
PIGVYSATHR YTWPDYLITF VQFLGLSIPG FLLALILLIT ASRLWDQPIG GLFSPQYADA
PWSLAKLWDF IRHVWIAIVV LAIGATAGLT RVMRANLLDV LNMQYIQTAR AKGLKESTVI
WKHAVRNAIH PLVMSLGTLL PALVVGETLI AIILSLPTIG PLYLDALRSQ DMYLAGTILV
MLSALLLVGN LIADLLLAWV DPRVRLE