| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2341 |
|---|
| Symbol | |
|---|
| ID | 5539822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3019879 |
|---|
| End bp | 3020916 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640894474 |
|---|
| Product | glycosyl transferase group 1 |
|---|
| Protein accession | YP_001432442 |
|---|
| Protein GI | 156742313 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.220594 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCGTC CACTCTACAT TTCGCCGGTT GGTCGCGGCG GCGTCGATTT TGGCATTCAG
AACATCACTC GCGCAGTGCG ACGCTACGGC GCGCCGCGTG CCGAATTGCT GCGCCTGCCG
GAGATCTACA ATTTTCTGCC TATACTGATC CCGCGCGGGT TGCCGCGTGG TTGGTGGCGG
GGATTCGACC TCATTCAGGG GCGTTCGCGC GTGGCATTTG CGCTGCGCGC GCCGGGACGC
CCCCTTGTCA CAACCGTTCA CCACCTGACG ACCGATCCTG ACCTTCAGCC CTACAGCACA
CCGGCGCAGC GGTTGTTCTA TCGCCTGATC GAAGCGCGCT ACGACTGGTG GTCGATCAGT
TCCGCCGATG CGGTGGTGTG CGTCTCGCGC TACACGCAAC AACAGGTCGC CCGCGCCTAC
GGATACACCA ACACCACCGT CATCTACGAT GGGATCGACA CTGATGTGTT TGTGCCGCCT
CCCGACATGC AACGGCGCAA CGATGGATTG CCCGACTGCG ACGGACGCAT TCGCCTGCTC
TTCGTCGGCA ATCGGACGCG ACGCAAGGGG TTCGACCTGC TGCCGCGCAT CATGAACCTG
CTGCCGGAAG CGTATGTTTT GTATTACACG AGCGGCTTCC AGGACGTTGA TGAAGGTCCA
CCGCACCCGC GCATGGTTCC GATTGGCGCG CCGGACCGCG ATGGATTGGT GGCGGCGTAT
CAGTCGTGCG ACATCCTGCT GGCGCCGTCG CGCCTGGAGG GGTTCGGGAT CGTGCAGGCG
GAGGCGCTGG CGTGCGGACG ACCGGTCGTG ACCACGCGCA TTTCCGCGTT GCCGGAAGTC
GTCGATCATG AACGGTCCGG TTTTCTCTGC CCGCGCGATG ACGTCGCCGC TTACGCAGAG
GCGGTGCAGC GGCTCGGCGA AGATGAAGCG CTGCGACGGC GCTTTGGCGA ATACGGGCGC
GAGAAAGTGG CGCGTTCATT TGGATTCGAG CAACTGGGGC GTGGATTTCT GGACCTCTAC
GAGCGTCTGG TGCGATGA
|
|---|
| Protein sequence | MVRPLYISPV GRGGVDFGIQ NITRAVRRYG APRAELLRLP EIYNFLPILI PRGLPRGWWR
GFDLIQGRSR VAFALRAPGR PLVTTVHHLT TDPDLQPYST PAQRLFYRLI EARYDWWSIS
SADAVVCVSR YTQQQVARAY GYTNTTVIYD GIDTDVFVPP PDMQRRNDGL PDCDGRIRLL
FVGNRTRRKG FDLLPRIMNL LPEAYVLYYT SGFQDVDEGP PHPRMVPIGA PDRDGLVAAY
QSCDILLAPS RLEGFGIVQA EALACGRPVV TTRISALPEV VDHERSGFLC PRDDVAAYAE
AVQRLGEDEA LRRRFGEYGR EKVARSFGFE QLGRGFLDLY ERLVR
|
|---|
| |