| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2308 |
|---|
| Symbol | |
|---|
| ID | 5539789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | + |
|---|
| Start bp | 2976530 |
|---|
| End bp | 2978377 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640894441 |
|---|
| Product | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein |
|---|
| Protein accession | YP_001432409 |
|---|
| Protein GI | 156742280 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.945813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACAAA TGCCCGACAC TGAAATCCAG CCACGTCCGC TTGATCGCCC GGCATCCGAA
CCTATCGTGA ACGACTTTTC GATCGTCGCA GCGACGGTCA ACGGTTCGGG CAGCCAGACG
GCGAACAATG TGCTGATGCG CGCCATCTTC AAGATGGGTG TGCCGGTCAG CGGCAAGAAC
CTCTTTCCAT CGAACATTCA AGGGCTGCCG ACCTGGTTCA CCATTCGCGT CAGCAAAGAT
GGCTACACAG CCCGGCGTGA GACGACCGAA ATCCTGGTTG CCTTCAATCA GCGCACTGCC
GATGAGGACC TGGCATCGCT CGTTCCCGGC GGCGTCTGCG TTCATCCGAA CGATATTACT
TTCACCAATC CGCGTTCCGA TGTTTCGTTC TATCCGCTGC CGGTGCGCGA CCTGGTCAAA
CAATCCGGTG TGGATGCAAA ACTGCGTGAT TACATCGCCA ATATGGTCTA TGTCGGCGCT
TTGGCGGAAC TGCTGAGCAT CGACATGAAC GAGATCAAAG CGGCGCTCGA ACGCCATTTC
AAAGGCAAAG CCAAACCGGT CAGTCTGAAT TATGGCGTTG TAGTTGCGGC TGCCGAATGG
GTGCGCGCCA ACCTGCCGAA GACCGATCGG TTCCAGGTAG CGCCGATGGA CAAAACGCAA
GGTCTGATCC TGGTCGATGG GAATACTGCC GCAGCATTCG GCGCACTGAT GGGGGGAATG
ACCGTGTGCG CCTGGTACCC GATCACTCCC TCGACTAGCC TGGTTGATGC CATGACCGAA
CTAGCGCCAA TCCTGCGCGC CGATCCTGAG ACGAATACAA CGACCTATGC CATTATCCAG
ACGGAGGACG AAATCGCGGC TGCCGGGATC GTGGTCGGTG CGGGATGGGC AGGCGCGCGC
GCGATGACCG CCACCTCCGG TCCGGGTCTA TCGCTTATGA ATGAGTTCGT GAGCCTGGCA
TACTTTGCCG AGGTTCCCTG TGTCATCTGG GATGTGCAGC GCATGGGACC GAGCACCGGT
CTGCCGACCC GCACCTCGCA GGGCGATGTT CTGTCTGCCT ACTACATGGG GCATGGCGAT
ACCCATCATG TCATCCTGTT CCCCGGCAGC ATGATCGAGT GCTTCGAGTT TGGCTATCTG
GCGTTCGACC TGGCGGAGCG CTTGCAGACT CCGGTGTTGG TGTTGAGCGA TCTCGATCTG
GGTATGAACA ACTGGATGTC CGAGCCGTTC ACCTATCCCG ATAGACCGCT TGACCGCGGC
AAGGTGCTGA GCGCTGATGA GTTGGAGAAA TTCAAGGATT GGGGACGCTA CAAGGATATC
GACGGCGATG GGATCCCCTA TCGCACGTTG CCGGGCAATC CCAACCCGCG CGCGGCATAC
CTGGCGCGTG GCACCGGGCA CAATGAATAC GCGATCTATA GCGAACGCCC ACAGGACTGG
CAGAGAAATC TGGATCGCCT GACGCGCAAG CACAACACGG CGCGCACCCT TGTGCCAAAG
CCGGTGGTGC AGGAAGCCGA AGACGCAACC ATCGGAATTG TCGCCTATGG CTCGACCGAC
CCGGCGGTGC GCGAGGCATG CGATATGCTG CGCGCACGGG GTATTACGGC AAGTTATTTG
CGCATTCGCG CGCTGCCGCT GGAAGCGACA CTGACCGACT TCCTGGCGAA GTATGAGCGG
GTGTATGTCG TGGAATTAAA CCAGGATGGT CAGATGGCGC AACTGGTGCA GTTGCACGCG
CCGGAGTACG CAGCGCGCAT TCGCCCGATC CATATCTGCA ATGGTTTGCC GATGAGCGCA
CAATTCGTGG TGGACTCGAT TGTGAGCGCC GAGCATCCCG TAACGTGA
|
|---|
| Protein sequence | MIQMPDTEIQ PRPLDRPASE PIVNDFSIVA ATVNGSGSQT ANNVLMRAIF KMGVPVSGKN
LFPSNIQGLP TWFTIRVSKD GYTARRETTE ILVAFNQRTA DEDLASLVPG GVCVHPNDIT
FTNPRSDVSF YPLPVRDLVK QSGVDAKLRD YIANMVYVGA LAELLSIDMN EIKAALERHF
KGKAKPVSLN YGVVVAAAEW VRANLPKTDR FQVAPMDKTQ GLILVDGNTA AAFGALMGGM
TVCAWYPITP STSLVDAMTE LAPILRADPE TNTTTYAIIQ TEDEIAAAGI VVGAGWAGAR
AMTATSGPGL SLMNEFVSLA YFAEVPCVIW DVQRMGPSTG LPTRTSQGDV LSAYYMGHGD
THHVILFPGS MIECFEFGYL AFDLAERLQT PVLVLSDLDL GMNNWMSEPF TYPDRPLDRG
KVLSADELEK FKDWGRYKDI DGDGIPYRTL PGNPNPRAAY LARGTGHNEY AIYSERPQDW
QRNLDRLTRK HNTARTLVPK PVVQEAEDAT IGIVAYGSTD PAVREACDML RARGITASYL
RIRALPLEAT LTDFLAKYER VYVVELNQDG QMAQLVQLHA PEYAARIRPI HICNGLPMSA
QFVVDSIVSA EHPVT
|
|---|
| |