Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2298 |
Symbol | |
ID | 5539779 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 2965130 |
End bp | 2965834 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640894431 |
Product | ABC transporter related |
Protein accession | YP_001432399 |
Protein GI | 156742270 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.644067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.429574 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTACAGG TTGAGCATCT GAATGTCGCC TACGACACGC TTCAGGTGTT GTGGGACGTT TCGCTGGAGG TGCGCGAAGG CGAGATTGTC GCCCTGATCG GCTCGAACGG CGCCGGCAAA ACGACGCTGC TCAGAACGAT CTCGGGCTTG ATGAAGCCGT TGTTCGGTTC AATCCGCTTT ATGGGCGAGG AGATCGCCGG TCTGCCGCCC CACGAGATAT GTCGGCGCGG GGTGATCCAG GTTCCTGAAG GACGCGCCTT GTTCCCGCGG ATGCGAGTCC TCGAAAATCT AGAACTCGGC GCCTACCTGC CGGCCGCGCG CGCGCAGCGC CACGAGACCA TCGAGTATGT CTACCATCTC TTTCCCCGCT TGAAAGAACG CTGGCGACAG GACGCCGGAA CCCTCAGCGG CGGTGAGCAA CAGATGGTCG CTATCGGGCG AGCGCTCATG GCGCGCCCGA AACTTCTGAT GCTCGATGAA CCGTCGCTTG GTCTGGCGCC GGTGCTGGTC GAGACGATCA TGGAGGTTCT GACGCGCCTG AATGCGGAAG GCATGACGAT CCTGCTTGTG TCGCAAGAGG TGCATCAGGC GCTCGCCATC GCGCATCGCG CCTACGTGAT CGAAAATGGA CGGATTGTGC GCAGCGGATC ATCGCGCGAA CTGCGCGATG ATGACGCTGT GCGCAGTGCA TATTTAGGGT TGTAA
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Protein sequence | MLQVEHLNVA YDTLQVLWDV SLEVREGEIV ALIGSNGAGK TTLLRTISGL MKPLFGSIRF MGEEIAGLPP HEICRRGVIQ VPEGRALFPR MRVLENLELG AYLPAARAQR HETIEYVYHL FPRLKERWRQ DAGTLSGGEQ QMVAIGRALM ARPKLLMLDE PSLGLAPVLV ETIMEVLTRL NAEGMTILLV SQEVHQALAI AHRAYVIENG RIVRSGSSRE LRDDDAVRSA YLGL
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