Gene Rcas_2293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2293 
Symbol 
ID5539774 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2958776 
End bp2960710 
Gene Length1935 bp 
Protein Length644 aa 
Translation table11 
GC content63% 
IMG OID640894426 
ProductDNA polymerase III, subunits gamma and tau 
Protein accessionYP_001432394 
Protein GI156742265 
COG category[L] Replication, recombination and repair 
COG ID[COG2812] DNA polymerase III, gamma/tau subunits 
TIGRFAM ID[TIGR02397] DNA polymerase III, subunit gamma and tau
[TIGR00678] DNA polymerase III, delta' subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.566282 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.158563 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGTCC AGGCGCTCTA CCGGCGCTAC CGGTCCCAGA CGTTCGATGA ACTGATTGGA 
CAGGAGCACG TCGTTCGCAC CCTGCGCAAC GCCATTGCGG AAGGGCGGGT TGCGCACGCC
TATCTCTTCA CCGGCCCGCG TGGCGTCGGC AAAACTACTG TGGCGCGCCT GCTGGCGAAG
GCGGTCAACT GCACCGCACC GCCAGCGGAA CGACCCTGCG GCGTGTGCGA GTCGTGCCGT
TCGATTGCGG AAGGGCGCGC GGTCGATGTA ATCGAAATGG ACGCCGCTTC ACACACCAGC
GTCGAAGATG CGCGCGAGAT CATCGAACGG GTGCAGTTTC GCCCGGCAGT CGCACGCACG
AAGGTCTATA TCATCGACGA AGTGCACATG CTTTCGACAG CCGCGTTCAA CGCGCTCCTG
AAAACGCTCG AAGAGCCGCC GCCGCATGCG CTCTTCATCC TGGCAACCAC CGAGGTGCAC
AAAGTTCCGG CAACGATCCT GTCACGCTGC CAACGGTTCG TCTTCAATCG TCACACGGTT
GCGTCGATTG CGGCACATCT GCGCATGATC GCCACGCAAG AAGGGGTGAC GCTCGAACCG
GGCGCTGCCG AAGCGATTGC ACGCGCTGCA ACCGGAAGCA TGCGCGATGC ATTGAGTGTG
CTCGATCAGT TGATGGCATA CGGCGGCGGG ACGGTCTCGC TCGAACAGGT GCGCAATCTG
TTGGGCGCCA GCGAAATGCA GGAAGTGACT ACGCTGGTGG ACGCCCTGAT CGCTGCCGAT
CTGCCTGGCG CGTTGCGCGT AGTTGCCGAT GTCGCCGCCG CAGGCGCCGA TCTGCGCCAG
TTCACTCGTG ATCTGGTCGA ACGATTGCGT GCGCTCATGC TGATCTGCGC CGGCGCCGAC
CGTTCGCTGC TCGATGTTGC TGAAGAAGAA GCCGCGCAGA TCGAACGCCA GGCACGCACT
GTCAGTCTTG GCGATCTGAT GCGCTGGGTC AAACTGTTCA GCGAACTCGA TTATCAGTTA
CGCATCAGTT CCTATGGGCA ACTGCCGCTC GAACTGGCGG TGATTGAAGC GGTGATCGCC
TCCGCGCCGG CGGCAACCGC TGCCCAAAGC ACGGTTCCTG CCACACCGCC GCGTCCGTCG
GCGCGCCCGA CAACCGCCCC CGCCCGCGAT GCTGCGCAAC CGCAACGCGC CCCGGCGCAA
CCGACAACAG CGCCTGCCCA CGATAGAACA CCGCCGCAGC CCCCACCCGC ACGTGCTGCC
CCTGCTCACA ACGCTGAACC GCCACAACGC GATCTGGCGC CACCAGCCAC CGTACCCGTC
CGCGACGACA TGCCGCCTGT TCCAACAATA CGCCGTGCGG GTGCAACCGG CACAGCGGCA
GCATCTCCCG TCGATGCTGC ACGCGAAGCG CCAGGTGACG CACCGCAGGC ATCAGCGCGC
CAACCGGACT CGACCGGTGA TCCGTTCATC CGCCATCAAG AGCAGACCCG CCGGGCATCG
AACCCCGGTA TATCGACGGA GTCCGGCGAG GGTGTGGCGG CCGCTAATGC CGATGCCGTC
GCTCTCGAAC GAATCGAGGG CATCTGGTCC GCCGTCGTGC GTGATGTGCG CGTCCACAAC
AAAACGCTTC AGGCGCTGCT CAACAGTGGC GCGCGCCCTG TCGATGTCAA GGACAACATA
CTCGTTCTGG AAGTGCCCAG CGAGTGGTTG ATGAACCAGA TCGAAAAACC TGCAATGCGC
CAGATTGTCG AAGAGGTGCT GAGTAAGCAC ATGGGCGCGC GATTCGCCAT TCGCTGCGCG
GTCGAGACGC AGCGACGCGA GAATCCAGGC GCGCTGCGCG AGCAGATCCG CGCCTCGCGT
AAGGATCCAC TCGTGCGCGC TGCTCTCAAT ATTTTCGACG CCGACATTAT CGCAGTGGAA
GACCCAAATG ACTGA
 
Protein sequence
MTVQALYRRY RSQTFDELIG QEHVVRTLRN AIAEGRVAHA YLFTGPRGVG KTTVARLLAK 
AVNCTAPPAE RPCGVCESCR SIAEGRAVDV IEMDAASHTS VEDAREIIER VQFRPAVART
KVYIIDEVHM LSTAAFNALL KTLEEPPPHA LFILATTEVH KVPATILSRC QRFVFNRHTV
ASIAAHLRMI ATQEGVTLEP GAAEAIARAA TGSMRDALSV LDQLMAYGGG TVSLEQVRNL
LGASEMQEVT TLVDALIAAD LPGALRVVAD VAAAGADLRQ FTRDLVERLR ALMLICAGAD
RSLLDVAEEE AAQIERQART VSLGDLMRWV KLFSELDYQL RISSYGQLPL ELAVIEAVIA
SAPAATAAQS TVPATPPRPS ARPTTAPARD AAQPQRAPAQ PTTAPAHDRT PPQPPPARAA
PAHNAEPPQR DLAPPATVPV RDDMPPVPTI RRAGATGTAA ASPVDAAREA PGDAPQASAR
QPDSTGDPFI RHQEQTRRAS NPGISTESGE GVAAANADAV ALERIEGIWS AVVRDVRVHN
KTLQALLNSG ARPVDVKDNI LVLEVPSEWL MNQIEKPAMR QIVEEVLSKH MGARFAIRCA
VETQRRENPG ALREQIRASR KDPLVRAALN IFDADIIAVE DPND