Gene Rcas_2227 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2227 
Symbol 
ID5539708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2875929 
End bp2876252 
Gene Length324 bp 
Protein Length107 aa 
Translation table11 
GC content36% 
IMG OID640894360 
Productexcinuclease ABC subunit C 
Protein accessionYP_001432328 
Protein GI156742199 
COG category[L] Replication, recombination and repair 
COG ID[COG2827] Predicted endonuclease containing a URI domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.08802e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.27007e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGAAACT ATAACTTCTA TGTTTATATA CTTACTAACT GGAACAACAA AGTCATGTAT 
ATCGGTATGA CGAATAACCT TGAACGCAGG ATATATGAAC ACAAAAACAA AATGGTAGAT
GGTTTTACTA AAAAATATAA TGTAAATAAA TTGGTTTACT ATGAACACAC AACAGATGTC
TATGCGGCAA TCGCCAGAGA AAAAGAAATT AAAAAATGGC GACGGGAGAA GAAGAACAAA
CTGGTAATGA GTATGAACCC TGAATGGAAG GATTTGAGTT CCGAGTTTGG AGTGGGGGAG
GATTTCTCGC TGCGCTCGAA ATGA
 
Protein sequence
MRNYNFYVYI LTNWNNKVMY IGMTNNLERR IYEHKNKMVD GFTKKYNVNK LVYYEHTTDV 
YAAIAREKEI KKWRREKKNK LVMSMNPEWK DLSSEFGVGE DFSLRSK