| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2227 |
|---|
| Symbol | |
|---|
| ID | 5539708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 2875929 |
|---|
| End bp | 2876252 |
|---|
| Gene Length | 324 bp |
|---|
| Protein Length | 107 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640894360 |
|---|
| Product | excinuclease ABC subunit C |
|---|
| Protein accession | YP_001432328 |
|---|
| Protein GI | 156742199 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2827] Predicted endonuclease containing a URI domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000408802 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000527007 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAACT ATAACTTCTA TGTTTATATA CTTACTAACT GGAACAACAA AGTCATGTAT
ATCGGTATGA CGAATAACCT TGAACGCAGG ATATATGAAC ACAAAAACAA AATGGTAGAT
GGTTTTACTA AAAAATATAA TGTAAATAAA TTGGTTTACT ATGAACACAC AACAGATGTC
TATGCGGCAA TCGCCAGAGA AAAAGAAATT AAAAAATGGC GACGGGAGAA GAAGAACAAA
CTGGTAATGA GTATGAACCC TGAATGGAAG GATTTGAGTT CCGAGTTTGG AGTGGGGGAG
GATTTCTCGC TGCGCTCGAA ATGA
|
|---|
| Protein sequence | MRNYNFYVYI LTNWNNKVMY IGMTNNLERR IYEHKNKMVD GFTKKYNVNK LVYYEHTTDV
YAAIAREKEI KKWRREKKNK LVMSMNPEWK DLSSEFGVGE DFSLRSK
|
|---|
| |