Gene Rcas_2080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_2080 
Symbol 
ID5539560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp2670253 
End bp2671491 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content64% 
IMG OID640894215 
Productprotein of unknown function DUF395 YeeE/YedE 
Protein accessionYP_001432184 
Protein GI156742055 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAATG CATTGCCAGG GAGCAGCCCG ACTGATCGGG CTGCTCCTTC CAAAACTGAA 
TTGACTGCGG CGGACGTTCT GCGGTATGGC GGTGCATTGC TGATGGTTGC TGCTCTGCTG
GGTGGCGCAT ATCTGCTCCA GGCGATGCCG GGGCGTGGTT CGGCGGCGGC GCTTTCCCTG
CTGATCGGCG CCGCGCTCGG TGTCGCCTTC GAGCGCGGGA GGTTCTGTTT CTTCTGTATC
TTCCGCGATT TCATCGAGTA TCGCAATGCA GGTCCGCTCT CTGCGATCCT GATGGCGCTG
GCGGTGAGCG GTATCGGGTA TGCCATCGTC TTCGGCGCAT TCCTGCCCAA CCCGGCAGGC
GGTCGGCTGG CGCCTGATGC ACATATCGGT CCGGTCAGTC CGGCGCTGGT GGCTGCCGGT
CTGATGTTCG GCTTGGGGAT GGCGCTCTCG GGTGCGTGTA TCAGCGGCCA TCTGTACCGC
CTGGGAGAGG GATCAGGCTA TGCGCCGCCG GCGCTCATCG GCGCGCTGAT CGGCTTTGGG
CTTGGATTCC GAACATGGAA CTGGCTCTAT GCGATGGTGA TCGCCGATGC GCCGGTTGTC
TGGTTGCCGC ATTGGGTCGG CTACGGCGGG TCACTCCTTT TGCACCTGAC AGTTCTTGGC
ATCCTGGCGC TGATGCTCCT GCGCTTCGTC CCGCCGCTGC CGCCCCGTCC CGCCCGTCAA
CTCGACATAA CGTATTTGCG CGAAGCGCTC TTCCGTGACC GCTGGAACCC GCTCGTGACC
GGCGCTATGG TCGGGATCAT CAGCGTTGTA GCATATCTGC GGGTTGAACC GCTTGGCGTT
ACAGCGCAAC TCGGCAGTGC GACGCGAACG GTGATGAACT GGGCGGGATG GCTGCCGGAC
CGCCTCAACG GTCTGGATAG TTTCGCCGGT TGCGCCACGC AGGTGGTGCA GACCATCACC
GACAACGGTT GGCTGATCGG CGGGTTGGTG CTGGGAGCGT TCAGTGCTGC GCTGCTCGCC
GGGCGTTTTC AGCCGGCATT GCCGCGCGCT TGGGGGAGTG TCACTGCGCT GCTCGGCGGG
GTGTTGATGG GATGGGGTGC GATGACGGCG CTTGGCTGCA CGGTGGGAAC GCTGCTCTCC
GGTATCGCTG CATTTGCGCT ATCGGGGTGG GTGTTTGGCG CCGCCGTCTT CGTCGGCGTG
TGGCTTGGCA TCACATTGCG CTTGCACCGG TGGGTGTAG
 
Protein sequence
MSNALPGSSP TDRAAPSKTE LTAADVLRYG GALLMVAALL GGAYLLQAMP GRGSAAALSL 
LIGAALGVAF ERGRFCFFCI FRDFIEYRNA GPLSAILMAL AVSGIGYAIV FGAFLPNPAG
GRLAPDAHIG PVSPALVAAG LMFGLGMALS GACISGHLYR LGEGSGYAPP ALIGALIGFG
LGFRTWNWLY AMVIADAPVV WLPHWVGYGG SLLLHLTVLG ILALMLLRFV PPLPPRPARQ
LDITYLREAL FRDRWNPLVT GAMVGIISVV AYLRVEPLGV TAQLGSATRT VMNWAGWLPD
RLNGLDSFAG CATQVVQTIT DNGWLIGGLV LGAFSAALLA GRFQPALPRA WGSVTALLGG
VLMGWGAMTA LGCTVGTLLS GIAAFALSGW VFGAAVFVGV WLGITLRLHR WV